Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3117 140 7e-28 seq1263 136 9e-27 seq1353 122 2e-22 >seq3117 Length=57653 Score = 140 bits (154), Expect = 7e-28 Identities = 306/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | ||||| || |||| Sbjct 28822 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 28881 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 28882 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 28941 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| ||||||||||| || ||| | || | ||| || | || || Sbjct 28942 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGTGC-CTCCTCTACGATCTTCT 29000 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | ||| || ||| | || || | || || || || | Sbjct 29001 CCGCGTCAAGCTCGACGAGTCG---CGCGTCCGCGAGATAGTCGCCGACGCCGTCGATAT 29057 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || || ||| | |||||||| | || ||| ||| | ||||||||| | || Sbjct 29058 AGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGGCATGAACGGCGTGCT 29117 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | |||| ||||| ||| | |||| Sbjct 29118 CATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGTCACAAGAA 29177 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| ||||| || | || |||||||| || || || || || || || Sbjct 29178 GATGTACAACGTGGCCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGAC 29237 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 29238 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 29270 >seq1263 Length=124836 Score = 136 bits (150), Expect = 9e-27 Identities = 303/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | ||||| || |||| Sbjct 20133 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 20192 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 20193 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 20252 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||||||||| || ||| | || | || | || ||| Sbjct 20253 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCCTGCCTCCTCTACGACCTTCTC 20312 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | ||| || ||| | || || | || || || || | Sbjct 20313 CGCGTCAAGCTCGACGAGTCG---CGCGTCCGCGAGATAGTCGCCGACGCCGTCGATATA 20369 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || || ||| | |||||||| | || ||| ||| | ||||||||| | ||| Sbjct 20370 GAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGGCATGAACGGCGTGCTC 20429 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 20430 ATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACAAGAAG 20489 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| | ||||| || | || |||||||| || || || || || || || Sbjct 20490 ATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGACC 20549 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 20550 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 20581 >seq1353 Length=118606 Score = 122 bits (134), Expect = 2e-22 Identities = 302/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || |||||||| ||||| | | ||||| || || || | || || || ||| Sbjct 95244 TTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC 95303 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 95304 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAG 95363 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| |||||||||||||| ||| | |||| ||| ||| | || || Sbjct 95364 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGC-CTTCTCTACGACCTCCT 95422 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | || || ||| | ||| || | || || || || | Sbjct 95423 CCGCGTCAAGCTGGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 95479 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| || ||| | |||||||| |||| ||| || | ||||||||| | || Sbjct 95480 CGAGCGCGAGTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCT 95539 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | |||||| |||| ||||| ||||||||| | | || || | || | |||| Sbjct 95540 TATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCACAAGAA 95599 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | || || || | || ||||||||||| || || || || || || Sbjct 95600 GATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGAC 95659 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 95660 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 95692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102687695984150