Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3496 91.5 1e-13 seq559 91.5 1e-13 seq4941 89.7 5e-13 seq1015 87.8 2e-12 seq212 86.0 6e-12 seq3117 84.2 2e-11 seq1222 84.2 2e-11 >seq3496 Length=52490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 27174 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 27233 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 27234 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 27293 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 27294 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 27352 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| ||||| || || || || || || || |||||| Sbjct 27353 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 27401 >seq559 Length=180664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 32352 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 32293 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 32292 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 32233 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 32232 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 32174 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| ||||| || || || || || || || |||||| Sbjct 32173 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 32125 >seq4941 Length=31460 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 19738 ATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 19797 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || |||||||||||| Sbjct 19798 GCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGC 19857 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || ||| || | || | || | ||||| || ||||| Sbjct 19858 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCAATCGTGTCAGATGACTC 19916 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || |||||||| || || || |||||||| ||||| Sbjct 19917 AACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 19967 >seq1015 Length=139126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||||||||| | | ||| || |||||||| || ||||| ||||| || || ||| Sbjct 101319 TCCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 101378 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | || ||||| ||| | || | || |||||||||||||| Sbjct 101379 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 101438 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| || ||||| | Sbjct 101439 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCA 101497 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || | || | || || || || || || || || || || |||||| Sbjct 101498 CCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 101547 >seq212 Length=258318 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||||| || || || || || |||||||| ||||| || || || Sbjct 17129 ATGCCACCCCTGAGCCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCA 17188 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | ||| || || ||| | || | || ||||||||||| Sbjct 17189 GCAAGGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGG 17248 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || | || | || | |||||| || ||||| Sbjct 17249 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTC 17307 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || || || || ||||| Sbjct 17308 CACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 17358 >seq3117 Length=57653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 138380 GCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAG 138439 ||||||||||| | ||| | ||| |||||||| ||||| || |||||| || || || Sbjct 28983 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 28924 Query 138440 CCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaa 138499 |||||||||| ||| |||||| | |||||||| |||| |||||||| || Sbjct 28923 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAA 28864 Query 138500 aaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 | ||| ||||| ||||| || || | ||| |||| Sbjct 28863 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGC 28825 >seq1222 Length=126723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| |||||||| | | ||| || |||||||| || ||||| ||||| || || ||| Sbjct 7009 TCCACCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 6950 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | || ||||| ||| | || | || |||||||||||||| Sbjct 6949 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGG 6890 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| || ||||| | Sbjct 6889 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCA 6831 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || | || | || || || || || || || || || || |||||| Sbjct 6830 CCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 6781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451926308605640