Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq7208 288 1e-72 seq691 260 2e-64 seq2365 237 2e-57 seq160 161 1e-34 >seq7208 Length=13341 Score = 288 bits (318), Expect = 1e-72 Identities = 457/649 (70%), Gaps = 5/649 (1%) Strand=Plus/Minus Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || |||| |||||||| || | | || | ||||||||| | |||| |||||| ||| Sbjct 2322 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2263 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 |||| || ||||| || || |||||||| || || | ||||| || || ||| | ||| Sbjct 2262 TTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2204 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGC 8053 |||||||||| ||| ||||| ||| ||| ||||||| ||||||||||| || | || | Sbjct 2203 ATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2144 Query 8054 ATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCA 8113 ||| | | ||| ||| |||||||| ||| |||| | ||| | ||| | || || Sbjct 2143 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCT 2084 Query 8114 GCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGT 8173 ||||| |||| || || | ||| ||||| |||||| |||| | || || |||| Sbjct 2083 GCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAAGT 2024 Query 8174 TCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGG 8233 ||||| ||||||||||| || | | ||| | | |||||| | | || || | Sbjct 2023 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 1964 Query 8234 AAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAG 8293 |||||||||| ||||| | ||| ||||||| | | || ||||| || | || || || Sbjct 1963 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 1904 Query 8294 TGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTG-TTGCCATA 8352 || | | || || |||| |||||| || ||||||||||| || ||| || | ||| Sbjct 1903 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATA 1844 Query 8353 CATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGAC 8412 || | |||||| || || ||| | || || ||||| || || |||||||| |||| Sbjct 1843 AATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGAT 1784 Query 8413 GAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGA 8471 ||| |||| || || ||| | | |||| | | ||||| ||||||| ||||| | Sbjct 1783 GAAGGCGATAATAAATACAGA-GGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAA 1725 Query 8472 ACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 |||| | || || |||| ||| ||||| |||| | |||| ||||| Sbjct 1724 ACCATCGGATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGAA 1677 >seq691 Length=167025 Score = 260 bits (288), Expect = 2e-64 Identities = 345/475 (73%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006 ||||| |||||||| || || | |||||| || || ||||| ||||||||||||||| Sbjct 130704 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 130763 Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGA 8066 | | ||| |||| ||| ||||||| ||||||||||| || | || |||| | ||||||| Sbjct 130764 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 130823 Query 8067 AAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAG 8126 || |||||||||| || || | | ||| ||||||| || || ||||| ||||| | Sbjct 130824 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 130883 Query 8127 AGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGAC 8186 | ||||| ||| ||||| ||| ||||||| |||| | || ||||||||||||||||| Sbjct 130884 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 130943 Query 8187 CCATGTATGCATAGATAC-CGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCG 8245 |||| || || || ||| | | | ||| || | | || || | |||||||||| Sbjct 130944 CCATATA-ACA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCA 131001 Query 8246 TTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATA 8305 ||||| | ||| ||||||||||| || |||||||| || || || || || | || || Sbjct 131002 TTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATC 131061 Query 8306 GCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCA 8365 || | ||| |||| || |||||||||| || ||||| ||||| | | |||||| Sbjct 131062 GCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCA 131121 Query 8366 GCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGA 8420 | || | || || || ||||| || | ||| | || || | ||| |||| Sbjct 131122 AAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 131176 >seq2365 Length=77851 Score = 237 bits (262), Expect = 2e-57 Identities = 331/464 (71%), Gaps = 14/464 (3%) Strand=Plus/Minus Query 7957 ACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 || ||| || || | |||||| || || ||||| ||||||||||||||| | | ||| || Sbjct 13886 ACAAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 13827 Query 8017 AAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTG 8076 || ||| ||||||| ||||||||||| || | ||||||| | ||||||||| ||||| Sbjct 13826 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 13767 Query 8077 ACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||| | ||| || | | ||| ||||||| || || | ||| ||||| || | ||| || Sbjct 13766 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAAC 13707 Query 8137 ACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGC 8196 | ||||| ||| ||||||| |||| | || ||||||||||||||||||||| || Sbjct 13706 AGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACA 13647 Query 8197 ATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCA 8256 | | ||| | | |||||| | | || || | |||||||||| ||||| | ||| Sbjct 13646 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCA 13587 Query 8257 CTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGA 8316 ||||||||||| || |||||| || || || || || |||| | ||| Sbjct 13586 TTCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT------ 13538 Query 8317 AGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTC 8376 |||| || ||||||||||| || ||||| ||||| | | |||||| | || || Sbjct 13537 -GGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTC 13479 Query 8377 ACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGA 8420 | || || ||||| || | ||| ||| |||| ||| |||| Sbjct 13478 GTGAATACCATCAATATCTATTGGA--AGCTGCGATGAAGGCGA 13437 >seq160 Length=286096 Score = 161 bits (178), Expect = 1e-34 Identities = 164/213 (77%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 7602 GGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGT 7661 |||||| | || ||||| || || | || |||||||| | ||||| | || |||| Sbjct 255338 GGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGT 255279 Query 7662 TGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGA 7721 |||| |||||||| || |||||||||||||| || |||| ||| | |||||||||||||| Sbjct 255278 TGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGA 255219 Query 7722 TGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAG 7781 | || || || ||||| || || |||||||| | ||||| ||||||||||| || Sbjct 255218 TCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAG 255162 Query 7782 CGTATTGGAAGATCAGACGACCAAAGTATCCGT 7814 | ||||||||||| | |||||||| || |||| Sbjct 255161 CATATTGGAAGATTAATCGACCAAAATAACCGT 255129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622018968794960