Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3117 183 5e-41 seq1263 178 2e-39 seq1353 131 3e-25 >seq3117 Length=57653 Score = 183 bits (202), Expect = 5e-41 Identities = 499/752 (66%), Gaps = 28/752 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 29253 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTT 29194 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||||| || |||| || || ||| |||| | ||| || || || || Sbjct 29193 GGCCACGTTGTACATCTTCTTGTGACCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 29134 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| || ||| || | | ||| || || | ||| ||||||||| || | Sbjct 29133 GATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCA 29074 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 29073 GACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGCG-GACGCGCGACTCGT 29015 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| | | | || | | |||||||||||||||||||||||||| | Sbjct 29014 ---CGAGCTTGACGCGGAGAAGATCGT---AGAGGAGGCACGCAAAGTCGCAGTGCAGAC 28961 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | ||||||||||||||| || || | Sbjct 28960 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTTTCT 28901 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| |||| || ||| ||||| ||||| ||| || ||| Sbjct 28900 TGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCGAAC 28842 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 28841 GCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGCCCACTC 28786 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | | ||| | |||| |||| | ||||| || Sbjct 28785 GGCC----TTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCTTCT 28730 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 28729 CGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 28670 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| ||| || |||||| ||| || || ||| Sbjct 28669 CGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCACCTGGACGTCGGACATGA 28610 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| ||| || |||||||| | |||| Sbjct 28609 ACC-GCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGGCGAAGAAAGCGAGCACG 28551 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||||| || | |||||| |||||| Sbjct 28550 TGGGAGATGAAGTGGCGCTCGTCGGGGTTGAG 28519 >seq1263 Length=124836 Score = 178 bits (196), Expect = 2e-39 Identities = 498/752 (66%), Gaps = 28/752 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 20564 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTT 20505 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || || ||| |||| | ||| || || || || Sbjct 20504 GGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 20445 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| || ||| || | | ||| || || | ||| ||||||||| || | Sbjct 20444 GATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCA 20385 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 20384 GACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGCG-GACGCGCGACTCGT 20326 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| | | |||| | | |||||||| ||||||||||||||||| | Sbjct 20325 ---CGAGCTTGACGCGGAGAAGGTCGT---AGAGGAGGCAGGCAAAGTCGCAGTGCAGAC 20272 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | ||||||||||||||| || || | Sbjct 20271 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTTTCT 20212 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| |||| || ||| ||||| ||||| ||| || ||| Sbjct 20211 TGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCGAAC 20153 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 20152 GCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGCCCACTC 20097 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | | ||| | |||| |||| | ||||| || Sbjct 20096 GGCC----TTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCTTCT 20041 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 20040 CGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 19981 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| ||| || |||||| ||| || || ||| Sbjct 19980 CGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCACCTGGACGTCGGACATGA 19921 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| ||| || |||||||| | |||| Sbjct 19920 ACC-GCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGGCGAAGAAAGCTAGCACG 19862 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||||| || | |||||| |||||| Sbjct 19861 TGGGAGATGAAGTGGCGCTCGTCGGGGTTGAG 19830 >seq1353 Length=118606 Score = 131 bits (144), Expect = 3e-25 Identities = 521/806 (65%), Gaps = 28/806 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || ||| || ||||| | |||| || || Sbjct 95675 CTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGATT 95616 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || | |||| |||| | ||| || || || || Sbjct 95615 GGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCGGTCGGCGACGAACTC 95556 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 || ||| | ||| || | | ||| || || | || ||| ||||| || | Sbjct 95555 GACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCAGGGAAGCGCGTCGCA 95496 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 95495 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 95437 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 || ||||| | | | |||| | | || |||||||| |||||||||||||| | Sbjct 95436 ---CCAGCTTGACGCGGAGGAGGTCGT---AGAGAAGGCACGCGAAGTCGCAGTGCAGGC 95383 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||| ||||||| ||| || | Sbjct 95382 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCCGCGTTTCT 95323 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| || | | | | || ||||| ||||| ||| || ||| Sbjct 95322 TGAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAC 95264 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | ||| | || ||| | | | | | | |||| | ||| ||| || Sbjct 95263 GCGACAAGACGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGTCCACTC 95208 Query 160123 AGCCTTCTTTGCGATGCACGGCATG---CG-CTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | || ||| | ||| || | | ||||| || Sbjct 95207 GGCC----TTGCGGCGCACGGCGGGGACCGTCTCTATGGCTCGGAAGAGCCGGTCCTTCT 95152 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 || | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 95151 CCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 95092 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 | ||||| ||||| ||| |||||| |||||| ||| || || ||| Sbjct 95091 CAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGCGACCTGGACGTCGGACATGA 95032 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| || || ||||| || | ||| Sbjct 95031 ACC-GCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAGAAGGCGAGAACG 94973 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||||| || | |||||| |||||| |||||||| |||||| | Sbjct 94972 TGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTCCCAGTGCCGCACGTCGGCG 94913 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCA 160443 | | || ||||| || ||| |||| Sbjct 94912 GAGAGGTCCACCTCCTCGGCGGTCCA 94887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795019934161040