Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1353 136 5e-27 seq6706 134 2e-26 seq214 134 2e-26 seq3117 131 2e-25 seq1754 131 2e-25 seq1263 129 7e-25 seq4862 91.5 2e-13 seq2823 87.8 2e-12 >seq1353 Length=118606 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || || || Sbjct 95243 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 95302 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct 95303 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 95362 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 95363 GCTCATCTCCCGCGACGAGGGCCTGCAC 95390 >seq6706 Length=16376 Score = 134 bits (148), Expect = 2e-26 Identities = 273/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 12460 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 12401 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| || || |||||| | |||||||||||||||| |||||||| || || | Sbjct 12400 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 12343 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 12342 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 12283 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 16123 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 12282 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 12225 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 12224 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 12166 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 12165 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 12106 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 | || || ||| | || ||| ||||| ||||| Sbjct 12105 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 12069 >seq214 Length=259295 Score = 134 bits (148), Expect = 2e-26 Identities = 259/372 (70%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 154452 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 154393 Query 15948 ATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| || || || ||| | ||||||||||||||||| |||||||||||||| | Sbjct 154392 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 154334 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 16060 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 154333 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 154280 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 154279 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 154222 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || ||||| || || ||||| ||||||||||||||||| | | | | Sbjct 154221 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACAAACTCAGAGCCC 154162 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 154161 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 154103 Query 16238 ACCCGTACCTGG 16249 ||| || || || Sbjct 154102 ACCGGTCCCAGG 154091 >seq3117 Length=57653 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 28821 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 28880 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 28881 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 28940 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| ||||| || |||||||| || ||| || |||||| Sbjct 28941 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 28980 >seq1754 Length=96608 Score = 131 bits (144), Expect = 2e-25 Identities = 258/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 22953 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 23012 Query 15948 ATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| || || || ||| | ||||||||||||||||| |||||||||||||| | Sbjct 23013 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 23071 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 16060 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 23072 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 23125 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 23126 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 23183 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 23184 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 23243 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 23244 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 23302 Query 16238 ACCCGTACCTGG 16249 ||| || || || Sbjct 23303 ACCGGTCCCAGG 23314 >seq1263 Length=124836 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 20132 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 20191 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 20192 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 20251 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| || |||||||| || ||| || ||||| Sbjct 20252 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 20290 >seq4862 Length=32157 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/327 (67%), Gaps = 22/327 (7%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || |||||||| |||| ||||||||||| || || |||| || || || | Sbjct 31362 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 31419 Query 16033 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 16086 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 31420 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 31475 Query 16087 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 31476 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 31531 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 31532 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 31591 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 31592 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 31651 Query 16263 AGGGCACCTCGT-GGAATCTTGGCGCC 16288 | |||| | | | || |||||||| || Sbjct 31652 A-GGCATCCCTTGGGGATCTTGGCTCC 31677 >seq2823 Length=63626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 211/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || ||||| || || | ||||||||||| || || |||| ||||| || | Sbjct 63473 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 63414 Query 16033 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 63413 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 63355 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 63354 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 63295 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 63294 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 63235 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 63234 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 63175 Query 16272 CGTGGAATCTTGGCGCC 16288 ||| |||||||| || Sbjct 63174 TTTGGGATCTTGGCTCC 63158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620636803958480