Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq484 138 1e-27 seq351 134 2e-26 seq415 127 2e-24 seq2823 120 4e-22 seq3117 111 2e-19 seq1263 111 2e-19 seq4862 109 6e-19 seq1353 105 8e-18 >seq484 Length=192246 Score = 138 bits (152), Expect = 1e-27 Identities = 317/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || ||| ||||| || ||| Sbjct 72055 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCGGGCCGGTTAGTGGCG 71996 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | | ||| | || |||| |||||||| ||||| || ||||||||| Sbjct 71995 GCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCTGTCAGCAGCTGGTTG 71936 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCG----AACGCTTCTTA 11676 | ||||| ||||||||||| || | ||||| ||||| |||| | | Sbjct 71935 AGTGTCTGCTCACGCTCATCATT------CCCCCCACCGATGCCGGTGCCGCGCTGCCTG 71882 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| ||||| |||||||| |||| ||||| |||||| |||| | | Sbjct 71881 CCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 71822 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||||| | ||| | | | Sbjct 71821 AACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCG-ACCC 71763 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 71762 GGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCTT 71703 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||||| || || | || || || |||| |||||| || || || | | Sbjct 71702 CCCCGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATTTTAGCCCCGATCGCCGT 71643 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| Sbjct 71642 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 71589 >seq351 Length=219492 Score = 134 bits (148), Expect = 2e-26 Identities = 322/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 209452 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCG 209511 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | || | |||| |||||||| || || |||||||||||| Sbjct 209512 GCAAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTG 209571 Query 11623 ATCGTCTGTTCACGCTCATCGTTG---GAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| | || || | ||||| |||| | | ||| Sbjct 209572 AGCGTCTGCTCCCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCTCCCG 209628 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 209629 ACGGCGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 209688 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| ||| || || || ||||||||||| | ||| | ||| | | Sbjct 209689 AGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACT---CGGACCCG 209745 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | ||| || || | ||| || |||||||| || || || ||||| Sbjct 209746 GACAGCGAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTC 209805 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | || || || |||| ||||||||| ||||| | | | Sbjct 209806 CCGGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATCTTCGCACCGATCGCGGTG 209865 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| |||| Sbjct 209866 AACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGCCTCGTCG 209925 Query 11977 A 11977 | Sbjct 209926 A 209926 >seq415 Length=208472 Score = 127 bits (140), Expect = 2e-24 Identities = 328/496 (66%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 111922 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCCGGCCGGTTAGTGGCG 111981 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | | ||| | || |||| |||||||| || || || ||||||||| Sbjct 111982 GCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCCGTCAGCAGCTGGTTG 112041 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA----CGCTTCTTA 11676 | ||||| || |||||||| || | ||||| ||||| |||| | | Sbjct 112042 AGTGTCTGCTCCCGCTCATCATT------CCCCCCACCGATGCCGGTGCCGCGCTGCCTG 112095 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| ||||| |||||||| |||| ||||| |||||| |||| | | Sbjct 112096 CCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 112155 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||||| | ||| | | | Sbjct 112156 AACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCG-ACCC 112214 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 112215 GGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCTT 112274 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||||| || || | || || || |||| |||||| || || || | | Sbjct 112275 CCCCGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATTTTAGCCCCGATCGCCGT 112334 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| ||| Sbjct 112335 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAACTCCTGCTTGGCCTCGTC 112394 Query 11976 GATACCCTCAACATCG 11991 || || | |||||| Sbjct 112395 GACGCCGGCGACATCG 112410 >seq2823 Length=63626 Score = 120 bits (132), Expect = 4e-22 Identities = 257/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || ||||||||||| ||||| |||||||| || ||||| || | ||||||||| Sbjct 63471 AAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 63416 Query 11653 ATACCACCT-GCCGA-----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 |||||| ||| | ||||| | | |||||||| ||||||||||| ||||| || Sbjct 63415 --ACCACCGAGCCCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACA 63358 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||||| |||| ||||| || || | || | ||| || ||| Sbjct 63357 ATGCAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACA 63298 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || || || | ||| ||||| | | ||| | || | |||||| || | ||| Sbjct 63297 CCGACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCC 63238 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCG 11886 |||| || ||| || |||||||| || || || || ||||||| || |||| ||| Sbjct 63237 CCAGAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCAT 63178 Query 11887 CCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACA 11946 || ||||||||||| || | ||| || || ||||||||||| || || Sbjct 63177 CCCTTTGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCTGGGTTCTTGAGGAAATCGACG 63118 Query 11947 ATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 63117 ACCTCCTGCAGCTCGAGCTTGGC 63095 >seq3117 Length=57653 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || |||||||| || Sbjct 28967 TGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCG 28908 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || ||| ||| ||||||||||||||||| || ||| Sbjct 28907 CGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAG 28848 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 28847 GCGAACGCGACGAGCCGCTCGGCGAA 28822 >seq1263 Length=124836 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || ||| || || Sbjct 20291 GGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCC 20232 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | |||||| ||||| |||||||| || ||| ||| ||||||||||| Sbjct 20231 CGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGAT 20172 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 |||||| || |||||||| |||| || ||||| || || Sbjct 20171 GCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA 20133 >seq4862 Length=32157 Score = 109 bits (120), Expect = 6e-19 Identities = 254/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || |||||||| || || || |||||||| || ||||| || | ||| ||||| | Sbjct 31364 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTC----C 31419 Query 11653 AT-ACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 | |||| || || ||||| | | || || ||||| |||||||| ||||| || || Sbjct 31420 ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGACAAT 31479 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||||| ||||| |||| ||||| || || | || | || || ||||| Sbjct 31480 GCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGACACC 31539 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 || || | ||| ||||| | | ||||| || | |||||| || | ||| || Sbjct 31540 GACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCC 31599 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || || |||||||| ||||| || ||||| | || |||| ||| || Sbjct 31600 GGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGCATCC 31659 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||||||||| || | ||| || || ||||||||||| || || | Sbjct 31660 CTTGGGGATCTTGGCTCCGAGCGCGGTGTACTTATCGGGATTCTTGAGGAAATCGACTAC 31719 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||||| || || |||||| Sbjct 31720 CTCCTGCAGCTCGAGCTTGGC 31740 >seq1353 Length=118606 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 95389 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCCG 95330 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 95329 CGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAG 95270 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| |||||||| || || Sbjct 95269 GCGAACGCGACAAGACGCTCGGCGAA 95244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588875807820200