Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq7208 251 9e-62 seq691 214 2e-50 seq2365 201 1e-46 seq160 149 8e-31 seq2604 89.7 6e-13 >seq7208 Length=13341 Score = 251 bits (278), Expect = 9e-62 Identities = 455/659 (69%), Gaps = 5/659 (1%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 |||| || ||||||| | | | |||| ||||| || | || || || | ||||| Sbjct 1667 GTGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTT 1725 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | ||||| |||| || || ||||||||| Sbjct 1726 TGGTGTTTTGATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCA 1784 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 |||| ||||| || || || || ||||| || | ||| || || |||||| | || | Sbjct 1785 TCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTT 1844 Query 179917 ATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCAC 179975 || | || ||| || ||||||||||| || |||||| ||| || || | | || Sbjct 1845 ATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCAT 1904 Query 179976 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 180035 || || || | || ||||| |||| |||| || ||| | || || |||||||||| Sbjct 1905 TTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGT 1964 Query 180036 CAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 180095 | || | || | |||||| | |||| | | || ||||||||||| |||||| Sbjct 1965 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAA 2024 Query 180096 CTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCT 180155 ||| || | ||||||| ||| || ||||| || | ||||| |||| || || Sbjct 2025 CTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCA 2084 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || | ||| | ||| | |||| ||| |||||||| || ||| | | ||| Sbjct 2085 GCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATG 2144 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 | | || || ||||| || ||||||| ||| ||| ||||| ||| ||||||||||| Sbjct 2145 GCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATC 2204 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || | ||| || || ||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 2205 CTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAAT 2263 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTC 180394 || ||||| |||| |||| |||||| || | | || |||||||||||||| || Sbjct 2264 GCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 214 bits (236), Expect = 2e-50 Identities = 348/493 (71%), Gaps = 6/493 (1%) Strand=Plus/Minus Query 179823 TTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGAT 179882 ||| | |||||| || || || |||||||||| || || | || | || || ||| Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 179883 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 179942 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 179943 GTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCG 180002 || |||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 180003 CTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATT 180062 ||||| || ||| | || || |||||||||| | || | || | || ||| | || Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 180063 G-GCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCC 180121 | | | || || || ||||||||||||||||||||| || | ||||||||| || Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 180122 CTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCT 180180 ||||| ||| || |||||||| ||||| || || || || ||||||| ||| | | | Sbjct 130903 TTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 130845 Query 180181 ATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCA 180240 | || |||||||||| |||||||| | ||| | | || || ||||| || |||| Sbjct 130844 ACGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCA 130785 Query 180241 ACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGG 180300 ||| ||| |||| ||| | | ||||||||||||||| ||||| || || |||||| | | Sbjct 130784 ACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 130725 Query 180301 GAGTAGCAGGTGT 180313 | ||||| ||||| Sbjct 130724 GTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 201 bits (222), Expect = 1e-46 Identities = 323/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 179848 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTT 179907 ||||||||||||| ||| || | || || ||||| || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 179908 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTG 179967 | | | ||||| ||||| || ||||||||||| | || ||||||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAACTCGATTG 13547 Query 179968 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTG 180027 || || || || || |||||| ||||| ||||| || ||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 180028 GTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTG 180087 |||||| | || | || | |||||| | |||| | | || |||||||||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 180088 AGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCT 180146 ||||||||||| || | ||||||||| || ||||| ||| || ||| |||| ||| Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCT 13721 Query 180147 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCT 180206 || || | || || ||||||| ||| | | || ||| | |||||||| |||||| Sbjct 13722 CCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 13781 Query 180207 GACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAG 180266 || | ||||| | || || ||||| || ||||||| ||| |||| ||| | | |||| Sbjct 13782 GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAG 13841 Query 180267 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGC 180307 ||||||||||| ||||| || || |||||| | || ||||| Sbjct 13842 CACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 149 bits (164), Expect = 8e-31 Identities = 160/211 (76%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || || || ||||| | |||||||| ||||| ||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 ||||| ||| || |||||||| || || |||||||||||||| | || | || || Sbjct 255191 TTCTT---GGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 |||||||||||||| || |||||||| |||||||| || | ||||| | |||||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACC 180666 || | || |||||||| || | |||||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAACC 255338 >seq2604 Length=68694 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 171942 CCATATTCCTGCCGTGCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACG 172001 ||||| || |||||||| || || ||||||| |||||||| ||| ||||| ||| | Sbjct 25078 CCATACTCATGCCGTGCTGGGGCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAG 25137 Query 172002 GTAGATCAGTCAGAGCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTG 172061 |||||||||||||| ||| || |||||||||| || || | ||| | || ||| Sbjct 25138 GTAGATCAGTCAGATGGATCCTTTCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTG 25197 Query 172062 ACCTGTGTTGCTTATCCTA 172080 || ||||| | || |||| Sbjct 25198 ACTTGTGTGTCATACCCTA 25216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610292963874360