Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq691 237 2e-57 seq7208 230 3e-55 seq2365 226 3e-54 seq160 111 2e-19 >seq691 Length=167025 Score = 237 bits (262), Expect = 2e-57 Identities = 330/461 (72%), Gaps = 1/461 (0%) Strand=Plus/Minus Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||||||||| | ||| | ||||| || || || | | || | |||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 || | ||||| ||||| || |||||||||| || ||||| | | || |||||| Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | || || |||||||| |||||||| ||| || ||||||||||||| || ||||||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 169743 |||||| || | | | | || ||| ||| | || | | || ||||| | || Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATGGGTCGTGAG 130936 Query 169744 TGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 169803 |||||||| | | | | || |||| ||||||||| ||||||||| || || || Sbjct 130935 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCT 130876 Query 169804 GTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGAT 169863 || | ||||| ||||| ||||| | ||| | | ||||| || ||||||||| Sbjct 130875 GTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGAT 130816 Query 169864 GGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCAT 169923 |||||| | |||| ||||| |||||||||||||||||| | || ||| | | |||||| Sbjct 130815 GGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 130756 Query 169924 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 ||||| || |||||||| || |||||| ||| ||||| || Sbjct 130755 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 130715 >seq7208 Length=13341 Score = 230 bits (254), Expect = 3e-55 Identities = 395/567 (70%), Gaps = 5/567 (1%) Strand=Plus/Plus Query 169447 TGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGC 169505 |||||||||||| | ||||| || |||| | || ||| | | ||| || || | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTC-TGTATTTATTATCGC 1779 Query 169506 ATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTT 169565 ||||| ||||| ||||| || ||||| || || || || || || |||||||| Sbjct 1780 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTT 1839 Query 169566 CTTGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGAC 169624 | ||| | || ||| || ||||||||||| || |||| | || || ||| || Sbjct 1840 AATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGAT 1899 Query 169625 TACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTC 169684 | || || |||||| | || ||||| ||| ||||||||||||||| || |||||||||| Sbjct 1900 TGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 169685 CTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGT 169744 ||| | || | | | | |||||| | ||||| | | || ||||| | | | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 169745 GGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAG 169804 ||||||| | | || || | |||||||||||| |||| | || || | || | Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 169805 TATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATG 169864 | | ||||| ||| | |||||| | ||||| |||||| || || ||| ||| Sbjct 2080 TTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATG 2139 Query 169865 GTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATA 169924 ||||| | |||| ||||| |||||||||||||||||| || ||||| ||| |||| | Sbjct 2140 GTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACA 2199 Query 169925 ACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTAT 169984 |||| || | |||||| || ||||| ||| ||||| || | ||||| || || ||| Sbjct 2200 ACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTAT 2258 Query 169985 TCTCAGCAATGCATGGTTCACTTGTTA 170011 || || |||||| |||| |||| || Sbjct 2259 TCAATGCTATGCATAGTTC-CTTGGTA 2284 >seq2365 Length=77851 Score = 226 bits (250), Expect = 3e-54 Identities = 292/404 (72%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 |||||||| | ||||| ||||| || ||||||||||| || ||||| | Sbjct 13491 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC---------- 13540 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 ||| | | || || |||||||| |||||| ||| || ||||||||||||| || ||| Sbjct 13541 -TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 13598 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 |||||||||||| || | | | | |||||| | ||||| | | || ||||| Sbjct 13599 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 13658 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 | |||||||||| | | | | || |||| ||||||||| ||||||| | || Sbjct 13659 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 13718 Query 169798 GCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTC 169857 || || || || ||||| ||||| ||||| | ||||| ||||||| || ||| Sbjct 13719 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 13778 Query 169858 TCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCA 169917 |||||||||||||| |||| ||||| |||||||||||||||||| | || ||| | | | Sbjct 13779 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 13838 Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961 ||||| ||||| || |||||||| || |||||| ||| ||||| Sbjct 13839 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 111 bits (122), Expect = 2e-19 Identities = 127/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 170108 ACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTAC 170167 ||||||| |||||||| | |||||||| |||||| ||||||||||| | | ||| Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 170168 ACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCA 170227 ||||||| || | | ||||| ||| | | ||||| || || | ||||| | | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 170228 CAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 | |||||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579114268662560