Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq7208 226 3e-54 seq691 215 6e-51 seq2365 183 3e-41 seq160 140 4e-28 >seq7208 Length=13341 Score = 226 bits (250), Expect = 3e-54 Identities = 445/651 (68%), Gaps = 9/651 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||| | | | |||| ||| || || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAA-CA 168040 || || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||||||||| || | |||| |||| || || || | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | || ||||| |||| | ||||| ||||| || || |||||||||| | ||| | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | || ||||| ||||||||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 |||| |||| |||||| ||||| |||| | || || | || || || || || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | | ||| || | || ||| |||||||| ||||| ||| ||| ||| | | |||| Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 |||| || || ||||||| ||| || ||||| || ||||||| || || | ||||| Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTT--TGTTTAGTGCTATGCA 168458 | || || || | || || ||||| ||||| ||| ||| | || | ||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATT---CGGCGGTTCCTATTCAATGCTATGCA 2271 Query 168459 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATC 168509 | ||||| || ||| | | | || ||||| |||||||| ||||| Sbjct 2272 TAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 215 bits (238), Expect = 6e-51 Identities = 353/501 (70%), Gaps = 6/501 (1%) Strand=Plus/Minus Query 167938 TTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 167997 ||| | |||||| || ||| || |||||||| | || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 167998 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 168057 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 168058 GTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCA 168117 || | || ||| | || || ||| | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 168118 CTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATC 168177 || ||||| ||||| || || |||||||||| | ||| | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 168178 G-GTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC-GTTTAGGTATGCGTC 168235 | ||| || || || ||||| ||||| ||||||||| || || || | ||||||| || Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATC 130905 Query 168236 CATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGT 168295 | ||||| ||||||||| || || || || || || || | ||| || ||| | | | Sbjct 130904 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 130845 Query 168296 ATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCA 168355 | || |||||||||| ||||||||||||| ||| | | |||||||| || || |||| Sbjct 130844 ACGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCA 130785 Query 168356 ACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCG 168415 ||| ||| | || ||| | | |||||||| || || |||||||| || || ||| | | Sbjct 130784 ACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 130725 Query 168416 GCGTTGCTGGGGTATTTGGTG 168436 | || ||||| ||| ||||| Sbjct 130724 GTGTAGCTGGTGTAGCTGGTG 130704 >seq2365 Length=77851 Score = 183 bits (202), Expect = 3e-41 Identities = 331/480 (69%), Gaps = 17/480 (4%) Strand=Plus/Plus Query 167945 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCC 168004 ||||| || ||| || |||||||| |||| ||| || | || || || || || | Sbjct 13420 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 13476 Query 168005 GTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCC 168064 || || | |||||| | | ||||| ||||| || ||||||||||| | Sbjct 13477 ACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------C 13529 Query 168065 CTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATG 168124 || ||| || | |||| || || || || || |||||| ||||| || |||| Sbjct 13530 ATTTTTCCAACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 13584 Query 168125 AGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCT 168184 | ||||| || || |||||||||| | ||| | || | |||||| | | ||| | Sbjct 13585 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 13644 Query 168185 ATGCATACATGGGACGTGAATGGGAACTTTCATATC-GTTTAGGTATGCGTCCATGGATC 168243 | || ||||| ||||| ||||||||| || || || | ||||||| ||| ||||| Sbjct 13645 CTTGTTATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATCCTTGGATT 13703 Query 168244 TGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTC 168303 ||||||| | || || || || | || || | ||| || ||| | | || ||| | Sbjct 13704 GCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 13763 Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||||||||||||| ||||| | |||||||| || || ||||||| ||| Sbjct 13764 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 13823 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||| | | |||||||| || || |||||||| || || ||| | || || ||| Sbjct 13824 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 140 bits (154), Expect = 4e-28 Identities = 152/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 168571 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 168630 ||||| || ||||| || ||||||||||| ||| ||||||||||| || || || ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 168631 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 168690 ||||| ||||| |||||||| || || ||||||||||| || | || | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 168691 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 168750 |||||||||||||| || |||||||| |||||||| || | ||||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 168751 GTGTTGAACACCTGGGCAGAT 168771 || | || || ||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574375874859720