Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq7208 280 2e-70 seq691 250 3e-61 seq2365 232 7e-56 seq160 158 1e-33 >seq7208 Length=13341 Score = 280 bits (310), Expect = 2e-70 Identities = 430/605 (71%), Gaps = 6/605 (1%) Strand=Plus/Plus Query 163830 TGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCG 163887 ||||| || ||| ||||||||||||| || ||| | |||||| ||||| || || ||| Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAACC-TCTGTATTTATTATCG 1778 Query 163888 CCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGC 163947 ||||| |||| ||||| || || || || |||||||||| ||| |||||| ||||| Sbjct 1779 CCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTT 1838 Query 163948 TCATGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGT 164006 | || ||| | || ||| || ||||||||||| || |||| | || || || | Sbjct 1839 TAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGA 1898 Query 164007 CTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGT 164066 | || || ||||| |||| ||||| |||| ||||||||||| | ||||| |||||| Sbjct 1899 TTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGT 1958 Query 164067 CCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAG 164126 |||| | || | || | |||||| | | ||| | | || ||||||||||| Sbjct 1959 CCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAA 2018 Query 164127 TGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCC 164186 |||||||| || || | |||| ||||||||||||| |||| | || || | || Sbjct 2019 TGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCT 2078 Query 164187 GTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGAC 164246 |||||||| || | || | ||| | |||| ||| |||||||| || ||| | Sbjct 2079 GTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAAT 2138 Query 164247 GCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCAC 164306 | ||| | | || |||||||| || ||||||| ||| || ||||| ||| ||||| Sbjct 2139 GGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCAC 2198 Query 164307 AACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTG 164366 |||||||| | ||| || || || || | || || ||||| ||||| |||||||| || Sbjct 2199 AACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTA 2257 Query 164367 TTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACT 164426 |||| ||| ||||| |||| |||| || ||| || | | || ||||| |||||| Sbjct 2258 TTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACT 2317 Query 164427 GAGTC 164431 || || Sbjct 2318 GAATC 2322 >seq691 Length=167025 Score = 250 bits (276), Expect = 3e-61 Identities = 341/470 (73%), Gaps = 7/470 (1%) Strand=Plus/Minus Query 163885 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTT 163944 |||||||| | || || | || | || || ||||||||||| | ||| || |||| Sbjct 131176 TCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTT 131117 Query 163945 CGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCC--CTCGTCCAATGCAAT 164002 | | | ||||| ||||| || |||||||||| || |||| || || | || || Sbjct 131116 CTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG--GCGAT 131059 Query 164003 TGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGG 164062 || | || || ||||| ||||||||||| ||||| |||||||||||| | ||||| || Sbjct 131058 CGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGG 130999 Query 164063 TGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG-GTATCTATGCATACATGGGTC 164121 |||||||| | || | || | || ||| | | | ||| || || || ||||||| Sbjct 130998 TGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATATGGGTC 130941 Query 164122 GTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTG 164181 ||||||||||||| || | |||| ||||||| |||||||||| |||||| || || | Sbjct 130940 GTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAG 130881 Query 164182 CACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCT 164241 | || |||||||| || | || || ||| || | || || |||||||||| |||| Sbjct 130880 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCT 130821 Query 164242 CTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAG 164301 |||| | ||| | | || |||||||| || ||||||| ||| | || ||| | | || Sbjct 130820 CTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAG 130761 Query 164302 AGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351 ||||||||||||| ||||| || || || ||| | || || ||||| ||| Sbjct 130760 AGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 130711 >seq2365 Length=77851 Score = 232 bits (256), Expect = 7e-56 Identities = 328/461 (71%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 163885 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTT 163944 |||||||| |||| ||| || | || || |||||||||| || ||| || |||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 163945 CGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTG 164004 | | | ||||| ||||| || ||||||||||| || |||| || | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 13547 Query 164005 GTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTG 164064 || || ||||| ||| |||||| ||||| |||||||||||| | ||||| |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 164065 GTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTG 164124 |||||| | || | || | |||||| | | ||| | | || |||||||||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 164125 AGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCAC 164184 |||||||||| || | |||| ||||||| |||||||||| |||||| | || || | Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 164185 CCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTG 164244 | ||| |||| || | || || ||| || | || ||| | |||||||| ||||||| Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 164245 ACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGC 164304 | | ||||| | || |||||||| || ||||||| ||| | || ||| | | ||||| Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 164305 ACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 164345 |||||||||| ||||| || || || ||| | || || ||| Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 158 bits (174), Expect = 1e-33 Identities = 163/213 (77%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 164491 ACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 164550 ||||||| |||||||| | ||||||||||| ||| ||||||||||| ||||| || | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 164551 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCA 164610 ||||||| ||||| |||||||| || || ||||||||||| || | ||| || | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 164611 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 164670 | |||||||||||||| || |||||||| |||||||| || | | ||| | || |||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 164671 GTGTGCTCAACACTTGGGCAGACGTTCTCAACC 164703 | || | || |||||||| || | |||||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556830060129960