Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq7208 230 3e-55 seq691 219 5e-52 seq2365 212 7e-50 seq160 95.1 1e-14 >seq7208 Length=13341 Score = 230 bits (254), Expect = 3e-55 Identities = 445/646 (69%), Gaps = 17/646 (3%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | | | |||| || || || || | ||||| | | ||||| ||||| || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || || || || Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACCTC-TGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAA-CA 168668 || || ||||| || || || || ||||| ||| || |||| ||| |||| || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 168669 ACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAA 168728 | || ||||| ||||| || |||| | ||| || ||| | | || || |||||| Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 168729 TTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAA 168788 |||| ||||| || | ||||| |||||||| ||||||||||||| || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 168789 TCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTA--TCAT 168845 | | |||||| || | || | || || |||||| | | |||||| ||| | || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 168846 ACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCAT 168905 | | |||| | | |||||||| |||| | |||||| | || || |||||| Sbjct 2035 ---GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGT---TGCAGCTG 2088 Query 168906 TTGCAG---TATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTC 168962 | ||| | ||| | | ||||| |||||| || ||| ||| |||||||| || Sbjct 2089 CTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTT 2148 Query 168963 TAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTA 169022 ||||||| ||||| || |||||||| ||| |||||||| ||| |||||||||| |||| Sbjct 2149 TAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTA 2208 Query 169023 TGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAA 169082 |||||| || || || ||| ||||| ||| | ||||| || || |||||| || | Sbjct 2209 CGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTA 2267 Query 169083 TGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGA 169128 ||||| |||| | ||||| ||| | | |||| ||||| ||||| Sbjct 2268 TGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq691 Length=167025 Score = 219 bits (242), Expect = 5e-52 Identities = 334/472 (71%), Gaps = 3/472 (1%) Strand=Plus/Minus Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| | || || ||||| || | || | ||||| || || || | | ||| | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 ||| || || | ||||||||||| || ||||| |||| || ||||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 || ||||| | || || ||||||||||||||||| || | | ||||| |||||||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCG-GAATCTCTGCCTACAT 168822 |||||||||||||| || | | | | || ||| || | | | | || || || || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATAT 130946 Query 168823 GGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTA 168882 |||| | |||||||| | | | | || |||||| |||||||| |||||| || Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 168883 TTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTC 168942 |||||| || || | || || ||| || ||| | | ||| | | ||||| || Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 168943 TTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCA 169002 |||||||||||||||| || ||||||| ||||| || |||||||| ||| | |||||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 169003 AGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGT 169054 | |||||||||||| ||||||||||| || || ||| ||| ||||| ||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq2365 Length=77851 Score = 212 bits (234), Expect = 7e-50 Identities = 289/404 (72%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 168647 GGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCA 168706 ||| || || | ||||||||||| || ||||| ||||| || ||||| || Sbjct 13491 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT--------- 13541 Query 168707 ATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAAT 168766 || | | || || ||||||||| |||||| || | | ||||| |||||||| ||| Sbjct 13542 --CGAT-TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 13598 Query 168767 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGT 168826 ||||||||||| || | | | | |||||| || | || | || || |||||| Sbjct 13599 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 13658 Query 168827 AGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCA 168886 | |||||||| | | | | || |||||| |||||||| |||||| ||||| Sbjct 13659 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 13718 Query 168887 GCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTC 168946 || || || || || || ||| || ||| | | ||||| ||||||| || |||| Sbjct 13719 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 13778 Query 168947 TCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 ||||||||||||||| ||||||| ||||| || |||||||| ||| | |||||| | | | Sbjct 13779 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 13838 Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGC 169050 ||||||||||| ||||||||||| || || ||| ||| ||||| Sbjct 13839 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 169199 GGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCAC 169258 || || || ||| ||||||||||||| ||||| |||||||||||||| | |||| || Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCG--TTCTTTAC 255188 Query 169259 TTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 169318 |||| | || | | || || ||| | | ||||| || || | ||||| |||| Sbjct 255189 -ACTTCTTGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 169319 ATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||||||||| | || || || || || |||||||| || || ||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564345581428320