Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq691 215 6e-51 seq2365 199 5e-46 seq7208 185 1e-41 seq160 116 4e-21 seq1331 95.1 1e-14 seq1703 89.7 6e-13 seq2885 86.0 7e-12 seq5998 84.2 3e-11 >seq691 Length=167025 Score = 215 bits (238), Expect = 6e-51 Identities = 325/461 (70%), Gaps = 1/461 (0%) Strand=Plus/Minus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||||||||| | ||| | ||||| || || || | | || || |||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || | ||||| ||||| || |||||||||| || ||||| | | || || || Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || || ||||| || |||||||| ||| | | ||||||||||| |||||||||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 |||||| || | | | | || ||| ||| || | | || ||||| | || Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATGGGTCGTGAG 130936 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| | | | | |||||| || ||||| ||| ||||||||||| ||| Sbjct 130935 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCT 130876 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 || |||| || |||||| ||| | | || | ||||||| || ||||||||| Sbjct 130875 GTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGAT 130816 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||| | |||| ||||| ||||| |||||||||||| | || ||| | | |||||| Sbjct 130815 GGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 130756 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 ||||| || |||||||| || |||||| ||| ||||| || Sbjct 130755 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 130715 >seq2365 Length=77851 Score = 199 bits (220), Expect = 5e-46 Identities = 286/404 (71%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 171976 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCA 172035 |||||||| | ||||| ||||| || ||||||||||| || ||||| || | Sbjct 13491 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCA-------ACTCG 13543 Query 172036 ATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAAT 172095 || | || || ||||| || |||||| ||| | | ||||||||||| |||||| Sbjct 13544 ATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 13598 Query 172096 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGA 172155 |||||||||||| || | | | | |||||| | | ||| | | || ||||| Sbjct 13599 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 13658 Query 172156 AGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCA 172215 | |||||||||| | | | | |||||| || ||||| ||| ||| ||||| Sbjct 13659 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 13718 Query 172216 GCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTC 172275 || ||||| ||||| || |||||| ||| | | || || | ||||| || ||| Sbjct 13719 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 13778 Query 172276 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCA 172335 |||||||||||||| |||| ||||| ||||| |||||||||||| | || ||| | | | Sbjct 13779 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 13838 Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 172379 ||||| ||||| || |||||||| || |||||| ||| ||||| Sbjct 13839 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 185 bits (204), Expect = 1e-41 Identities = 370/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||| ||||| || ||||| || || || || || ||| |||||| Sbjct 1778 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCT 1837 Query 171982 TTCTTATATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGG 172040 || | ||| | || ||| || ||||||||||| || |||| | || || || | Sbjct 1838 TTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAG 1897 Query 172041 TCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGG 172100 | || || ||||| | || ||||| ||| || ||||||||||| ||||||||||| Sbjct 1898 ATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGG 1957 Query 172101 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACA 172160 ||||| | || | | | | |||||| | | ||| | | || ||||| | | Sbjct 1958 TCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 2017 Query 172161 GTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACC 172220 |||||||| | | || |||| | | || ||||| ||| | |||||| | || Sbjct 2018 ATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCC 2077 Query 172221 TGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGA 172280 ||| |||| || ||| | ||| | | || || ||||| || || ||| | Sbjct 2078 TGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2137 Query 172281 TGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCA 172340 ||||||| | |||| ||||| ||||| |||||||||||| || ||||| ||| |||| Sbjct 2138 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCA 2197 Query 172341 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTT 172400 ||||| || | |||||| || ||||| ||| ||||| || | || || || || | Sbjct 2198 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CT 2256 Query 172401 ATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGC 172460 |||| || ||||| |||| || || || ||| | | |||| ||||| |||||| | Sbjct 2257 ATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAAC 2316 Query 172461 AGAATC 172466 ||||| Sbjct 2317 TGAATC 2322 >seq160 Length=286096 Score = 116 bits (128), Expect = 4e-21 Identities = 128/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 172526 ACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTC 172585 ||||||| |||||||| | |||||||| |||||| |||||||||||| | | | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 172586 ACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTA 172645 ||||||| || | | ||||| ||| | | ||||| || || | ||||| ||| Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 172646 CAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 | |||||||||||||| || |||||||| ||||||||||| || || ||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 >seq1331 Length=117103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| || || ||| ||| || | ||| |||||||| || ||||| ||| | || Sbjct 72762 ACAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCAGATGTTTGCCATCTTAACCTGCA 72821 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || ||||||||||| || || ||||||||| | || ||||||||||| Sbjct 72822 CAAGACATTTTGCATTCCACATGGCGGAGGTGGTCCTGGCATGGGCCCTATTGGTGT 72878 >seq1703 Length=99802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| || || ||| ||| || | ||| |||||||| || ||||| ||| | || Sbjct 59719 ACAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCAGATGTTTGCCATCTTAACCTGCA 59778 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || ||||||||||| || || |||||||| | || ||||||||||| Sbjct 59779 CAAGACATTTTGCATTCCACATGGCGGAGGTGGTCCTGGAATGGGCCCTATTGGTGT 59835 >seq2885 Length=62745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| || || ||| ||| || | ||| || ||||| || ||||| ||| | || Sbjct 4029 ACAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCTGATGTTTGCCATCTTAACCTTCA 3970 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || || ||||| || || || ||||||||| | |||||||||||||| Sbjct 3969 CAAGACATTTTGCATCCCACACGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGT 3913 >seq5998 Length=21088 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| || || ||| ||| || | ||| || ||||| || ||||| ||| | || Sbjct 14193 CAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCTGATGTTTGCCATCTTAACCTTCAC 14134 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || || ||||| || || || ||||||||| | |||||||||||||| Sbjct 14133 AAGACATTTTGCATCCCACACGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGT 14078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587951165140240