Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq7208 302 5e-77 seq691 264 1e-65 seq2365 239 5e-58 >seq7208 Length=13341 Score = 302 bits (334), Expect = 5e-77 Identities = 441/618 (71%), Gaps = 4/618 (1%) Strand=Plus/Plus Query 167119 GTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCT 167178 |||| || || | ||||| || ||| ||||||||||||| || | | |||||| ||| Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACC-TCT 1765 Query 167179 GT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCA 167237 || || || ||||||||| ||| |||||||| || || || |||||||| | || || Sbjct 1766 GTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCT 1825 Query 167238 GTTGCTGGTTCACTCATGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCTTCTTC 167296 ||| |||||| | || ||| | || ||| || ||||||||||| || |||||| ||| Sbjct 1826 GTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTC 1885 Query 167297 TAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTT 167356 | || || | | || || || || | || ||||| ||| | || || ||||| Sbjct 1886 TGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTT 1945 Query 167357 GTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTA 167416 |||||||||||||||| | || | ||| | |||||| | |||| | | || Sbjct 1946 ATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 2005 Query 167417 TATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGC 167476 |||||||||||| |||||||| || || | |||| |||||| ||||| |||| | Sbjct 2006 TATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTC 2065 Query 167477 ATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 167536 || || |||| || || || || | ||| | ||| | |||| ||| |||||||| Sbjct 2066 CTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGG 2125 Query 167537 TTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTT 167596 ||| ||| | | ||| || | || ||||||||||| ||||||| ||| ||| || Sbjct 2126 AAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATT 2185 Query 167597 CCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATT 167656 ||| ||| ||||||||||||| | ||| || || || || | || || ||||| ||||| Sbjct 2186 CCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATT 2245 Query 167657 CGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGA 167716 ||||||||| || |||| ||| ||||| |||| |||| |||||| || | | || Sbjct 2246 CGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGA 2304 Query 167717 AACCACCGAAACTGAGTC 167734 ||||| |||||||| || Sbjct 2305 GACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 264 bits (292), Expect = 1e-65 Identities = 346/475 (73%), Gaps = 3/475 (1%) Strand=Plus/Minus Query 167181 TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTT 167240 || || ||||||||| | | || | ||| | || || |||||||| ||| | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 167241 GCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAAT 167300 |||||| | | ||||| ||||| || |||||||||| || |||| ||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 167301 GCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTAC 167360 || || || | || || || || || |||||||| ||| | || || || ||||| ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTG-GCATCTATGCCTATAT 167419 ||||||||||||| | || | ||| | || ||| | ||| | | || || ||||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATAT 130946 Query 167420 GGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATA 167479 |||||||||||||||||| || | |||| ||||||| ||| ||||| ||||||||| Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 167480 CTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTC 167539 || ||||| || || || || ||||||| ||| | | || || |||||||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 167540 TTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCA 167599 ||||||||| | ||| || | || ||||||||||| ||||||| ||| |||| ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 167600 AGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 | ||||||||||||||| ||||| || || || ||| | || || ||||| ||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 130711 >seq2365 Length=77851 Score = 239 bits (264), Expect = 5e-58 Identities = 334/468 (71%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 167181 TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTT 167240 || || ||||||||| ||| ||| ||| | || || |||||||| | ||| || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 167241 GCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAAT 167300 |||||| | | ||||| ||||| || ||||||||||| || |||| || Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT------ 13541 Query 167301 GCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTAC 167360 | |||| || || || || || |||||| ||| | || || || ||||| ||| Sbjct 13542 -CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATG 167420 ||||||||||||| | || | ||| | |||||| | |||| | | |||||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || | |||| ||||||| ||| ||||| ||||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 167540 || ||||| || | || || ||||||| ||| | | || ||| | |||||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600 |||||||| | |||||| | || ||||||||||| ||||||| ||| |||| ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648 | ||||||||||||||| ||||| || || || ||| | || || ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560512633571600