Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq7208 235 8e-57 seq691 228 1e-54 seq2365 206 4e-48 seq160 96.9 5e-15 >seq7208 Length=13341 Score = 235 bits (260), Expect = 8e-57 Identities = 410/594 (69%), Gaps = 2/594 (0%) Strand=Plus/Plus Query 215339 TGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCA 215398 ||||||||||| | ||||| ||| | | | | || ||| || || || | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTGTATTTATTATCGCC 1780 Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 |||||||| || ||||| || ||||| || || || ||||| ||| |||||||||| Sbjct 1781 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTA 1840 Query 215459 ATGTATGGTAA-CAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATT 215517 || ||| | || ||| || ||||||||||| || | ||| ||| || ||| |||| Sbjct 1841 ATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 1900 Query 215518 ACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACC 215577 || || ||||| | || ||||| ||| ||||| |||||| | ||||||||||| || Sbjct 1901 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 1960 Query 215578 TTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTG 215637 || | || || | | |||||| | ||||| | || || || | | || Sbjct 1961 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2020 Query 215638 GGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGT 215697 ||||||| || | || |||| | | |||||||| |||| | || || | ||||| Sbjct 2021 GGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGT 2080 Query 215698 ATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGC 215757 | ||||| || | ||| | | || || ||||| || ||| ||| ||| Sbjct 2081 TGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGG 2140 Query 215758 TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 |||| | | ||||||||||| || ||||||| ||| ||| |||||||| ||||||| Sbjct 2141 TATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAA 2200 Query 215818 CATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTT 215877 ||| || | ||| ||||| ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 2201 CATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATT 2259 Query 215878 CTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGA 215931 | ||| ||||| |||| | || || ||| | | |||| ||||| ||||| Sbjct 2260 CAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq691 Length=167025 Score = 228 bits (252), Expect = 1e-54 Identities = 332/465 (71%), Gaps = 3/465 (1%) Strand=Plus/Minus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || ||||| || || | ||| | ||||| || || || | |||| || ||||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || |||||||||| || | || | || || |||||| Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || || || ||||| || |||||||| ||| | |||| |||||| | ||||||||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTG-GTATTTCTGCATACTGCGGAAGACA 215634 |||| | || || | | || ||| | ||| ||| | ||| || || | | Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA-TG-GGTCGTGA 130937 Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694 |||||||||| || | | | |||||| |||||||| |||||| || || || || Sbjct 130936 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCC 130877 Query 215695 TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGA 215754 ||| | ||||| ||| || ||| | | || | ||||||| || ||||||||| Sbjct 130876 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGA 130817 Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 || |||| | | ||||||||||| || ||||||| ||| |||| ||| ||| ||||| Sbjct 130816 TGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 130757 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGT 215859 |||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 130756 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 206 bits (228), Expect = 4e-48 Identities = 323/462 (70%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||| | ||||| || || || ||||| || ||||||| Sbjct 13439 GCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATTTTTGGTTCT 13496 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || ||||||||||| || | || ||| | || Sbjct 13497 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTC-----GA 13544 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || || || ||||| || |||||| ||| | |||| |||||| | ||||||||||| Sbjct 13545 TTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 13604 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAG 215635 |||| | || || | | |||||| | ||||| | || || || | || Sbjct 13605 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 13664 Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 ||||||||| || | | | |||||| |||||||| |||||| | || || ||| Sbjct 13665 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCT 13724 Query 215696 GTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGAT 215755 || || ||||| ||| || ||| | | || || | ||||| || |||||||||| Sbjct 13725 GTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGAT 13784 Query 215756 GCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCAC 215815 | |||||| | ||||||||||| || ||||||| ||| |||| ||| ||| |||||| Sbjct 13785 GGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 13844 Query 215816 AACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 ||||| || ||||| ||||| |||||||||||||| ||| || Sbjct 13845 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 216000 ACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTC 216059 ||||||| |||||||| | ||||||||||| || |||||||||||| | |||| Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCG--TTCTTT 255186 Query 216060 ACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAA 216119 || |||| | || || | ||||| | | |||||| ||||| | ||| | | Sbjct 255187 AC-ACTTCTTGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 216120 CTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTA 216179 ||||||| |||||||| || |||||||| |||||||| ||||| || || ||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 216180 AAGTTATTCCTACTTGGGCAGA 216201 |||||| ||||||||| || Sbjct 255306 GCGTTATTAATACTTGGGCTGA 255327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744954852306320