Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq7208 266 4e-66 seq691 244 1e-59 seq2365 223 4e-53 seq160 149 8e-31 >seq7208 Length=13341 Score = 266 bits (294), Expect = 4e-66 Identities = 438/622 (70%), Gaps = 11/622 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||||| ||| |||| || || | ||||||||||| |||||||||| || | ||| | Sbjct 1698 ACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 1756 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 |||||| ||||| || || | || ||| | ||||| ||||| || ||||| || ||||| Sbjct 1757 GCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 1815 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAA-CAACATCATCTCTGGTGCTGTTG 181992 | || || || |||||| | || ||| | || ||| || ||||||||||| || Sbjct 1816 TCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTA 1875 Query 181993 TCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTG 182052 | || | || || || | | || || |||||| | || ||||| || | ||| Sbjct 1876 TTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTG 1935 Query 182053 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCA 182112 |||| ||| | || || |||||||||| | || ||||| | |||||| | | || Sbjct 1936 ATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGG-- 1993 Query 182113 TCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCT 182169 | || || | | ||||| ||||| ||||||||| || | || |||| |||||| | Sbjct 1994 TGTA-GCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTT 2052 Query 182170 GGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATC 182229 |||| ||| | || || |||| || || || || | ||| | |||||| |||| | Sbjct 2053 GGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACC 2112 Query 182230 CTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289 || |||||||| || || ||| ||| | | |||||||| || || ||||||| Sbjct 2113 CTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACT 2172 Query 182290 ATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTG 182349 |||| || ||||| || |||||||||| |||| |||||| || ||||| || |||| Sbjct 2173 TTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTG 2232 Query 182350 TAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTT 182409 |||| ||||||||||| ||||| || || | ||| ||||| |||| ||||| || ||| Sbjct 2233 TAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTA 2291 Query 182410 CACTCGTCCGTGAGACGACTGA 182431 | || | ||||| ||||| Sbjct 2292 GTTTGCTCAGGGAGACCACTGA 2313 >seq691 Length=167025 Score = 244 bits (270), Expect = 1e-59 Identities = 335/466 (72%), Gaps = 3/466 (1%) Strand=Plus/Minus Query 181896 GCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCA 181955 || ||| | ||||| | ||| | ||||| || ||||| ||| | || | |||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 181956 CTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGT 182015 | | ||||| ||||| || |||||||||| || | ||| | | || || || Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 182016 CTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGT 182075 | || || |||||||| ||||||||||| || |||||||| ||| | || || |||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 182076 CCTTTCCAACTGGTTGTTTTCCACTTCCTGATCG-GCATCTACGCCTACATGGGACGTGA 182134 |||| | || ||||| | || ||| | | | | | || || ||||| ||||| Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATATGGGTCGTGA 130937 Query 182135 GTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCC 182194 |||||||||| || | | | ||||||| ||| ||||| ||| ||||| || ||||| Sbjct 130936 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCC 130877 Query 182195 AGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGA 182254 || || || || ||||||| ||||| | || || |||||||||| ||||| || Sbjct 130876 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGA 130817 Query 182255 TGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCA 182314 || ||| | | |||||||| || || ||||||| |||| | || ||| | | ||||| Sbjct 130816 TGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 130757 Query 182315 CAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTA 182360 |||||| ||||||||||| || |||||||| |||||||| |||||| Sbjct 130756 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 130711 >seq2365 Length=77851 Score = 223 bits (246), Expect = 4e-53 Identities = 313/437 (72%), Gaps = 18/437 (4%) Strand=Plus/Plus Query 181920 GATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATC 181979 ||||| || ||||| | ||| || | |||||| | | ||||| ||||| || ||| Sbjct 13461 GATATTGATGGTATTCACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 13520 Query 181980 TCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAA 182039 |||||||| || | |||||| | |||| || || |||||||| |||| Sbjct 13521 TCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGGAA 13568 Query 182040 GCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCAC 182099 ||||| || |||||||| ||| | || || |||||||||| | || ||||| | ||| Sbjct 13569 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 13628 Query 182100 TTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTA 182156 ||| | | || | || || | | ||||| ||||||||||||||| || | | | Sbjct 13629 TTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTG 13685 Query 182157 GGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 182216 ||||||| ||| ||||| ||| ||| | || ||||| || | || || ||||||| Sbjct 13686 GGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTT 13745 Query 182217 TTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCA 182276 ||||| | || ||| | |||||||| ||||| |||| ||||| | |||||||| Sbjct 13746 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCT 13805 Query 182277 GGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTC 182336 || || ||||||| |||| | || ||| | | ||||||||||| ||||||||||| || Sbjct 13806 GGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTT 13865 Query 182337 CACATGTTGGGTGTAGC 182353 |||||||| |||||||| Sbjct 13866 CACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 149 bits (164), Expect = 8e-31 Identities = 154/201 (77%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 182502 GGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCAC 182561 || || || ||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 182562 TTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACG 182621 ||||| ||||| |||||||| || || ||||||||||| || | ||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 182622 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 182681 |||||||||||||| || |||||||| |||||||| || | ||||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 182682 GTCCTTAACACTTGGGCAGAT 182702 || |||| |||||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611591942864200