Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq691 325 4e-84 seq7208 322 5e-83 seq2365 298 6e-76 seq160 147 2e-30 seq620 82.4 9e-11 >seq691 Length=167025 Score = 325 bits (360), Expect = 4e-84 Identities = 364/485 (75%), Gaps = 1/485 (0%) Strand=Plus/Minus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || ||||| || || | || | || |||||||||||||| | ||| | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 |||||| || | || || ||||| || |||||||||| | |||| ||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || |||||| | || || || || ||||||||||||||| | | ||||||||||| ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || ||||||||||| || | |||| | || ||| | | | ||||||||| || ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTG-TGTAGCTTGTTATATG 130945 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || | | || ||||||| |||||||||| || |||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || ||||| || |||||| | || |||||| || | || || |||||||||| ||| Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 ||||||||||||||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 | ||| || ||||| ||||||||||| || |||||| | || || ||||| ||| ||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 130705 Query 165337 GGATC 165341 | ||| Sbjct 130704 GCATC 130700 >seq7208 Length=13341 Score = 322 bits (356), Expect = 5e-83 Identities = 422/578 (73%), Gaps = 5/578 (1%) Strand=Plus/Plus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 ||||| || ||||||| || | ||||| |||||| | |||||||| || | | Sbjct 1698 ACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 1756 Query 164845 GCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 || || | ||| ||||||| || |||||||| ||||| || || || ||||||||||| Sbjct 1757 GCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 1815 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAA-CAACATCATCTCTGGTGCTGTCG 164962 || ||| ||||| |||||| |||| || | || ||| || ||||||||||| | Sbjct 1816 TCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTA 1875 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| | |||| || ||| || | || || || || |||| ||||| ||| | | Sbjct 1876 TTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTG 1935 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||||||||| ||||| |||||||||| || | |||| | |||||| | | |||| Sbjct 1936 ATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTG 1995 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || ||||||||||| |||||||| || | | |||| ||||||||||| Sbjct 1996 TAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGA 2055 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || | ||| | ||||| || |||||| | || ||||| | |||| ||| Sbjct 2056 TTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTA 2115 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 |||||||| ||||| ||| |||||||| || | || |||||||||||||| |||| || Sbjct 2116 CTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTA 2175 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || || ||||| ||| | || ||||| |||| |||||| || ||||| | || || | Sbjct 2176 TGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAG 2235 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 |||| |||||||| || || || ||| |||||||||| Sbjct 2236 CTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCAT 2272 >seq2365 Length=77851 Score = 298 bits (330), Expect = 6e-76 Identities = 347/468 (74%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || |||||||| ||| || | || ||||||||||||| || ||| | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATT 13487 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 |||||| || | || || ||||| || ||||||||||| | |||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 | || | || || || || ||| |||||||||| | | ||||||||||| ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || ||||||||||| || | |||| | |||||| | | ||||||||||| || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || | | || ||||||| |||||||||| || ||| || Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || ||||| | |||||| | || |||||| || | || ||| | |||||||| ||| Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 |||||||||||||||||| | || |||||||||||||| |||| |||| | || ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 165324 | ||| || ||||| ||||||||||| || |||||| | || || ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 147 bits (162), Expect = 2e-30 Identities = 138/175 (79%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 165470 ACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGC 165529 |||| || || ||||| | || |||||||| || |||||||| || ||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 165530 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCA 165589 ||||||| || || ||||||||||| || ||||||||||||||| | ||| |||| | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 165590 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA 165644 | |||||||||||||| || |||||||| |||||||| ||| | |||||||| || Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCA 255300 >seq620 Length=175579 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 16390 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 16331 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 16330 TACCTGACGCGTT 16318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563564914252160