Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq691 237 2e-57 seq7208 226 3e-54 seq2365 224 1e-53 seq160 113 5e-20 >seq691 Length=167025 Score = 237 bits (262), Expect = 2e-57 Identities = 336/471 (71%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| | || ||||| ||||| | || | || || ||||| || | | ||| | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 ||||| || | ||||| ||||| || |||||||||| || ||||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || ||||| | || || || || ||||||||||| ||| |||| ||||| ||||| || Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 || |||||||||||| | || || | | || ||| ||| | | || || ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | | || | ||||||| ||||||||| ||| |||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || |||| || ||||| ||||| | || || ||||||| ||| | Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 ||||| || || ||| || |||| ||||| ||||| || ||||| ||| | |||||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGT 170253 | |||||||||||| |||||||| ||||| || ||| ||| || |||||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq7208 Length=13341 Score = 226 bits (250), Expect = 3e-54 Identities = 408/594 (69%), Gaps = 2/594 (0%) Strand=Plus/Plus Query 169735 TGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCT 169794 ||||| ||||| ||||||||||| |||| | ||| | | ||||| | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTGTATTTATTATCGCC 1780 Query 169795 TTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTC 169854 |||||||||||||| || || || || ||||| || || ||||| ||||| || Sbjct 1781 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTA 1840 Query 169855 ATGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCT 169913 || ||| | || ||| || ||||||||||| || |||| | ||| || ||| | | Sbjct 1841 ATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 1900 Query 169914 CCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCC 169973 || || || || |||| ||||| ||| | | ||||| ||||| || || |||||||| Sbjct 1901 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 1960 Query 169974 TTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTG 170033 || | | || || | | |||||| | | || | || || |||||| | | || Sbjct 1961 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2020 Query 170034 GGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGT 170093 |||||| | |||| |||| |||||||||||| ||| | ||||| |||| || Sbjct 2021 GGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGT 2080 Query 170094 GTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGG 170153 |||| || ||| | |||||| | || ||| ||||| ||| ||| || | || Sbjct 2081 TGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGG 2140 Query 170154 AATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAA 170213 ||| || |||| ||||| ||||| || ||||| ||| |||||||| ||| ||||||| Sbjct 2141 TATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAA 2200 Query 170214 CATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTT 170273 ||| |||| ||| ||||| || || ||| || |||||| | ||||| || | || || Sbjct 2201 CATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATT 2259 Query 170274 CTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGA 170327 | || ||||| |||| | ||||| ||| | | |||| ||||| || || Sbjct 2260 CAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq2365 Length=77851 Score = 224 bits (248), Expect = 1e-53 Identities = 333/472 (71%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| | || |||||||||||| | | | || || ||||| || || ||| | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 ||||| || | ||||| ||||| || ||||||||||| || ||||| || Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT------ 13541 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || | | || || || || ||| |||||| ||| |||| ||||| ||||| || Sbjct 13542 -----CGAT-TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 || |||||||||||| | || || | | |||||| | | || | || || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | | || | ||||||| ||||||||| ||| ||| || Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || ||||| || ||||| ||||| | || ||| | ||||| ||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 ||||| || || |||||| |||| ||||| ||||| || ||||| ||| | |||||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTA 170254 | |||||||||||| |||||||| ||||| || ||| ||| || ||| ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGTA 13887 >seq160 Length=286096 Score = 113 bits (124), Expect = 5e-20 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCAC 170457 || || |||||| || | ||||||||||||||||| || ||||| |||| |||| || Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGT--TCTTTAC 255188 Query 170458 TTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACA 170517 |||| | ||| | | ||||||||| | |||||||| ||| | | |||||| | || Sbjct 255189 -ACTTCTTGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 170518 ATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTC 170555 |||||||| ||||| ||||| || || |||||||| || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 255285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582748850269600