Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq691 279 6e-70 seq7208 275 7e-69 seq2365 251 8e-62 seq160 131 2e-25 >seq691 Length=167025 Score = 279 bits (308), Expect = 6e-70 Identities = 349/475 (73%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 84389 TACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||||| || || ||||||||||| ||||||||||||||||| || || ||| ||| Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 84449 GACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACC 84508 |||| ||| ||||||| || || ||||| || | | ||| |||||||||||| || Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 84509 TTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGC 84568 ||| |||| || || | | ||| ||||||| || |||||||| ||||| || || || Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 130890 Query 84569 AACACAGATCCATGGACGCATACCGAGAC-GATATGAAAGTTCCCATTCACGACCCATGT 84627 |||| ||||| ||| ||||||| |||| || || ||||||||| ||||||||||| | Sbjct 130891 AACAGCAATCCAAGGATGCATACCCAGACAGAAAT-TAAGTTCCCACTCACGACCCATAT 130949 Query 84628 AAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATA 84687 || | | || ||| | ||| || | |||| || | |||||| |||||||| |||| Sbjct 130950 AACAAGCTACA-CAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 131008 Query 84688 GCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAG 84747 |||||| || | | ||| ||||||||||| || || ||||| | || || || | Sbjct 131009 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 131068 Query 84748 AGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTG 84807 | | ||||| | | ||||||| || || |||||||| || | | ||||||| | | Sbjct 131069 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 131128 Query 84808 GCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA 84862 ||| || ||||| |||||||| | ||| | || ||| ||| || || || || Sbjct 131129 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 131183 >seq7208 Length=13341 Score = 275 bits (304), Expect = 7e-69 Identities = 424/600 (71%), Gaps = 4/600 (1%) Strand=Plus/Minus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 || |||| || || || | || | | ||| || || | |||| |||||| ||| || Sbjct 2318 CAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCATTGA 2259 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || || |||||||| |||||| ||||||||| Sbjct 2258 ATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGT 2200 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || | |||||||| ||| ||| ||||||| || || ||||| || | | ||| | Sbjct 2199 TGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATAC 2140 Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||| ||| ||| ||||| || ||| || | | ||| | ||| | || ||||||| Sbjct 2139 CATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCTGCAA 2080 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCC 84612 | |||| || || | |||| ||||| |||||| |||| | || | |||||||| Sbjct 2079 CAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAAGTTCCC 2020 Query 84613 ATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG 84672 ||||||||||||| ||| | | |||||| | |||||| | |||| || | | ||| Sbjct 2019 ATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAG 1960 Query 84673 GTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTA 84732 | |||||||| |||| |||||| || | | ||| ||||| |||| || || ||||| | Sbjct 1959 GACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCA 1900 Query 84733 GACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTG-TTTCCGTACATG 84791 | || || ||| | |||| | ||||||||| || || ||| |||| || || Sbjct 1899 ATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATAAATT 1840 Query 84792 AGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAAT 84851 | ||||||| || |||||| | ||||| |||||||| ||||| || || | | ||| Sbjct 1839 AAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAG 1780 Query 84852 GCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCA 84910 || || || || ||||| || |||| | || || || ||||| | | |||||||| Sbjct 1779 GCGATAATAAATACAGA-GGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1721 >seq2365 Length=77851 Score = 251 bits (278), Expect = 8e-62 Identities = 324/445 (73%), Gaps = 14/445 (3%) Strand=Plus/Minus Query 84392 ACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGAC 84451 || ||| || || ||||||||||| ||||||||||||||||| || || ||| ||| || Sbjct 13886 ACAAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 13827 Query 84452 AAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTG 84511 || ||| ||||||| || || ||||| || | ||||| |||||||||||| ||||| Sbjct 13826 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 13767 Query 84512 CCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC 84571 || | ||| || | | ||| ||||||| || |||| ||| ||||| || | ||||| Sbjct 13766 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAAC 13707 Query 84572 ACAGATCCATGGACGCATACCGAGAC-GATATGAAAGTTCCCATTCACGACCCATGTAAG 84630 | ||||| ||| ||||||| |||| || || || ||||||| ||||||||||| ||| Sbjct 13706 AGCAATCCAAGGATGCATACCCAGACAGAAATTAA-GTTCCCACTCACGACCCATATAAC 13648 Query 84631 CAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCC 84690 | | |||||| | |||||| | |||| || | |||||| |||||||| |||| || Sbjct 13647 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 13588 Query 84691 ATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGG 84750 |||| || | | ||| |||||| ||| || || ||||| |||| | | Sbjct 13587 ATTCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCG-------AG 13540 Query 84751 ATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCT 84810 ||||| | ||||||||| || || |||||||| || | | ||||||| | |||| Sbjct 13539 TTGGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCT 13480 Query 84811 CACGGATACCGTCAATATCAACTGG 84835 | | ||||| |||||||| | ||| Sbjct 13479 CGTGAATACCATCAATATCTATTGG 13455 >seq160 Length=286096 Score = 131 bits (144), Expect = 2e-25 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || || Sbjct 255328 ATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAA 255269 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 ||||| || || |||||||| || |||| ||| | ||||| ||||| || || || || Sbjct 255268 ACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTACTAC 255209 Query 84167 TGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAA 84226 ||||| ||||||||| ||||| | ||||||| |||||||| |||||| ||||| Sbjct 255208 AGGCCAGGCAGCCAAG---AAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAA 255152 Query 84227 GATAAGACGACCGAAGTAGCCGT 84249 ||| | ||||| || || |||| Sbjct 255151 GATTAATCGACCAAAATAACCGT 255129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571176419219720