Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4598 123 3e-23 seq446 118 1e-21 >seq4598 Length=35162 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | |||||| || ||||| ||| Sbjct 34310 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 34369 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| |||||| ||||||||| ||| |||||| ||||| || |||| Sbjct 34370 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 34429 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| || ||||||||||| ||| Sbjct 34430 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 34489 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 34490 CCCTCAATGCTGTCATCTTTCAT 34512 >seq446 Length=200473 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | |||||| || ||||| ||| Sbjct 90947 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 90888 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| |||||| ||||||||| ||| |||||| ||||| | |||| Sbjct 90887 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAGCTGAA 90828 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| || ||||||||||| ||| Sbjct 90827 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 90768 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 90767 CCCTCAATGCTGTCATCTTTCAT 90745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562013178266760