Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq691 214 5e-51 seq7208 201 3e-47 seq2365 199 1e-46 seq160 107 6e-19 >seq691 Length=167025 Score = 214 bits (236), Expect = 5e-51 Identities = 332/473 (70%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| ||||| | || ||||||| ||||| || || |||| || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 | || || ||| | || ||||||||||| || || || | | | || | | | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || |||||| | ||||||||||| || |||||||||| | || || || ||| ||||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 ||||| || || ||| | || ||| | | || |||||| | | ||||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 130945 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || | |||||||||| || | | || || ||| || ||||| |||||||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | | || ||| || || ||||| |||| || |||| ||||| ||| Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 || |||||| ||| || | || |||||||||||||| ||||||||| | |||||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGT 26367 | ||| || || || || ||||| ||||| || ||| ||||| ||||| || Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq7208 Length=13341 Score = 201 bits (222), Expect = 3e-47 Identities = 383/556 (69%), Gaps = 6/556 (1%) Strand=Plus/Plus Query 25845 GATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTT 25903 ||||||| || || | ||||| || |||| | | || || | ||| ||||| | Sbjct 1719 GATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTC-TGTATTTATTATC 1777 Query 25904 GCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 25963 |||||||||||||| || || |||||||| ||||| || | |||||| |||| || || Sbjct 1778 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCT 1837 Query 25964 TTAATGTACGGAAA-CAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGG 26022 ||||| || |||| |||||| || || || || | | || | ||| || ||| | Sbjct 1838 TTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAG 1897 Query 26023 ACTACATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCG 26081 | | ||||||||||| | || ||||| |||| | || || ||| |||||||||| | Sbjct 1898 ATTGCATTTTTACCCACTTTGAGAAGC-GGCATTTGTTGATGAATGGTTATACAATGGTG 1956 Query 26082 GACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGAC 26141 | || | | | || ||| | | ||||||||| | || ||||| ||| || | Sbjct 1957 GTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 2016 Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 | |||||||| || | | || | | | || ||||| ||||| | ||| || | | Sbjct 2017 AATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTC 2076 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | || ||| || | |||||| | || ||| || ||||| |||||| | Sbjct 2077 CTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTA 2136 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 |||| ||| || | || |||||||||||||| ||||||||| |||||||| ||| | | Sbjct 2137 ATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGC 2196 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 | || || || | ||| ||||| || || ||||| ||||| || ||||| || | | Sbjct 2197 ACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-C 2255 Query 26382 TTTTCGCTGCTATGCA 26397 | ||| ||||||||| Sbjct 2256 TATTCAATGCTATGCA 2271 >seq2365 Length=77851 Score = 199 bits (220), Expect = 1e-46 Identities = 325/468 (69%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||||||||| | | ||||||| ||||| || | ||||| || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 | || || ||| | || ||||||||||| || || || || | | || ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 | || | ||||||||||| || |||||||| | || || || ||| ||||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 ||||| || || ||| | || ||| | | ||||||||| | || ||||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || | |||||||||| || | | || || ||| || ||||| ||||||| || Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | || || ||| || || ||||| |||| ||| | || ||||| ||| Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 || |||||| |||||| | || |||||||||||||| ||||||||| | |||||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | ||| || || || || ||||| ||||| || ||| ||||| ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 107 bits (118), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 26508 ACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTC 26567 |||| || ||||| ||||||| || || ||||| ||||| || ||| |||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 26568 ATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCA 26627 | ||||| ||| | ||||| || || || || ||| | || || | ||||| | | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 26628 CAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 | |||||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146702688005016