Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq691 268 3e-67 seq7208 259 1e-64 seq2365 248 3e-61 >seq691 Length=167025 Score = 268 bits (296), Expect = 3e-67 Identities = 345/475 (73%), Gaps = 1/475 (0%) Strand=Plus/Plus Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||| || || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| |||||| |||||||| || || || || | || |||||||||||||||||| || Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| || | || ||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 130890 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || |||||| || | || |||||||||| | || |||| || Sbjct 130891 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA 130950 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | || | | || || || | ||||| || | ||| || || || || ||||| Sbjct 130951 ACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 131009 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || || | |||||||||||| |||||||| || || | ||||| || | Sbjct 131010 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 131069 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | ||| | || | |||||||| || ||||||||||| ||||| | || | | ||| Sbjct 131070 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 131129 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 || ||||||||||| ||||| | ||| | || |||| || || || | |||| Sbjct 131130 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 131184 >seq7208 Length=13341 Score = 259 bits (286), Expect = 1e-64 Identities = 390/552 (71%), Gaps = 2/552 (0%) Strand=Plus/Minus Query 36360 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 36419 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2271 TGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2213 Query 36420 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 36479 ||| ||||||| ||||| | |||||| || ||| |||||| |||||||| || || || Sbjct 2212 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATT 2153 Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || | || |||||||| ||| ||||| ||||| ||| |||||||| |||||| | ||| Sbjct 2152 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCT 2093 Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTA 36599 || ||||||||||| | |||||| | ||| ||||| || | | |||| | | Sbjct 2092 GTAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACAT 2033 Query 36600 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACA 36659 ||||||||||||||| || |||| ||| | | ||||| | ||||| | ||| Sbjct 2032 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 1973 Query 36660 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 36719 || || | | | || || || || |||||||| || || | ||| ||||| || | | Sbjct 1972 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGT 1913 Query 36720 GGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTG 36779 ||||| || || | | ||| || || | || | || || |||||||| || ||| Sbjct 1912 GGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTG 1853 Query 36780 -TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 36838 |||| ||| | ||| | || | ||||||||| |||||||||| ||||| || ||||| Sbjct 1852 TTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGG 1793 Query 36839 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898 || || | || || || | |||| | | ||| || || | | ||||||||| | Sbjct 1792 AGCTGCGATGAAGGCGATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCATCAA 1733 Query 36899 TACCCCAAACCA 36910 || |||||||| Sbjct 1732 AACACCAAACCA 1721 >seq2365 Length=77851 Score = 248 bits (274), Expect = 3e-61 Identities = 315/434 (73%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 36396 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 36455 || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || |||| | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 36456 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 36515 ||||| |||||||| || || || || | ||||||||||||||||||||| ||||| ||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 36516 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 36575 | |||||| | ||||| |||||| || |||| |||||| ||||||| || ||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || |||||| || | || |||||||||| | || |||| ||| | Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 | ||||| | ||||| | ||||| || | ||| || || || || |||||||| || Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755 || || | |||||||||| |||||||| || || | | ||| | ||| Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCA-ATCGA-----------GTTGGA 13535 Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815 | || || |||||||| || ||||||||||| ||||| | || | | |||||| || Sbjct 13534 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTGA 13475 Query 36816 ATACCATCTATATC 36829 |||||||| ||||| Sbjct 13474 ATACCATCAATATC 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150430085534586