Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq7208 235 2e-57 seq691 230 7e-56 seq2365 217 4e-52 >seq7208 Length=13341 Score = 235 bits (260), Expect = 2e-57 Identities = 418/601 (70%), Gaps = 9/601 (1%) Strand=Plus/Minus Query 5581 ATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 5640 |||||||||| ||| | | || |||||||| ||||| ||||| | ||||| || || Sbjct 2272 ATGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGG 2214 Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 |||| ||||||| ||||| | |||||||||||| ||||||||| |||||||||||||| Sbjct 2213 ATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGAT 2154 Query 5701 ACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA--AAATA-C 5757 || | || |||||||| | |||||||| || || |||||| | ||| ||||| | Sbjct 2153 TCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGC 2094 Query 5758 TGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 || ||| | || ||||| || | |||||| | || |||||| || ||| | || || Sbjct 2093 TG--TAG-CAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAA 2037 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAA 5877 | ||||||||||||||| || |||| ||| || | ||||| | |||||| | Sbjct 2036 ACATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG 1977 Query 5878 GACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCA 5937 || | || | | || || |||||||| | ||||||||| | | || ||||| || Sbjct 1976 AACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCA 1917 Query 5938 GATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGAT 5997 | || || || || || | || || || || | || ||| || || || || Sbjct 1916 AAGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAAT 1857 Query 5998 GTTG-TTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTG 6056 ||| |||| ||| | || ||| || || || ||| | || || || || || |||| Sbjct 1856 ATTGTTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTG 1797 Query 6057 GGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCA 6116 | || || || | ||| || | |||||| ||| ||||| || || | | || |||| Sbjct 1796 GAGGAGCTGCGATGAAGGCGATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCA 1737 Query 6117 TTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGA 6176 | || ||||||||||| | | || || | || ||||| ||||| | | ||| |||| Sbjct 1736 TCAAAACACCAAACCATCGGATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGA 1678 Query 6177 A 6177 | Sbjct 1677 A 1677 >seq691 Length=167025 Score = 230 bits (254), Expect = 7e-56 Identities = 350/493 (71%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||||| | |||||| || |||||||||||||| ||||| ||| ||| ||| Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| || ||| | || || || | |||| || || ||||| || |||||||||| Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATG 130889 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || |||| || | | | || |||||||||| | || |||| | Sbjct 130890 CAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATAT 130949 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | || | ||| ||| || | || | || | || || || |||||||| | Sbjct 130950 AACAAGCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 131008 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 ||||||||| ||| || |||||||| || || || || || || || || || Sbjct 131009 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 131068 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || | | || || || || ||||||||||| |||| ||| || | | Sbjct 131069 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 131128 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 | | || || || || || || | ||| | || || | ||| || | |||||| | Sbjct 131129 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT-AGG 131187 Query 6090 TAGTTGCGGTTAA 6102 ||||||||| || Sbjct 131188 AAGTTGCGGTCAA 131200 >seq2365 Length=77851 Score = 217 bits (240), Expect = 4e-52 Identities = 293/406 (72%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 5617 AGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAA 5676 ||| ||||| | |||||| || |||||||||||||| ||||| ||| ||| |||||| | Sbjct 13883 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 13824 Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||||||||| |||||||||||||| || | ||||||||||||| ||||||||| || || Sbjct 13823 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 13764 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | |||||| | || || || | |||| || || | ||| || ||||||| ||| || Sbjct 13763 AATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGAAACAGGAGCTGAATTTGCAACAG 13705 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || |||| || | | | || |||||||||| | || |||| ||| | Sbjct 13704 CAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAG 13645 Query 5856 CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATT 5915 | | ||||| | |||||| | || | || | || || || |||||||| | ||||| Sbjct 13644 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 13585 Query 5916 CATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 |||| ||| || |||||| || || || || || |||| | |||||| Sbjct 13584 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTTGGA----- 13535 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 | || ||| || || || || ||||||||||| |||| ||| || Sbjct 13534 --AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 13491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152624930775174