Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq691 250 8e-62 seq7208 244 3e-60 seq2365 230 7e-56 >seq691 Length=167025 Score = 250 bits (276), Expect = 8e-62 Identities = 341/475 (72%), Gaps = 1/475 (0%) Strand=Plus/Plus Query 25869 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 25928 ||| || || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 25929 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 25988 |||| |||||| |||||||| || || || || | || |||||||||||||||||| || Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 25989 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 26048 ||| || | || ||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 130890 Query 26049 TACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 26108 ||| ||||| || ||| || || | || |||||||||| | || |||| || Sbjct 130891 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA 130950 Query 26109 AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAA 26168 | | | | | || || || | ||||| || | ||| || ||||| || || || Sbjct 130951 ACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 131009 Query 26169 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 ||| || || || | |||||||||||| |||||||| || || | ||||| || | | Sbjct 131010 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 131069 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 26288 | || | || | || ||||| || ||||||||||| ||||| | || | | ||| Sbjct 131070 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 131129 Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 || ||||||||||| ||||| | ||| | || |||| || || || | |||| Sbjct 131130 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 131184 >seq7208 Length=13341 Score = 244 bits (270), Expect = 3e-60 Identities = 387/552 (70%), Gaps = 2/552 (0%) Strand=Plus/Minus Query 25840 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 25899 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2271 TGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2213 Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 ||| ||||||| ||||| | |||||| || ||| |||||| |||||||| || || || Sbjct 2212 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATT 2153 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || | || |||||||| ||| ||||| ||||| ||| |||||||| |||||| | ||| Sbjct 2152 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCT 2093 Query 26020 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTA 26079 || ||||||||||| | |||||| | ||| ||||| || | | | || | | Sbjct 2092 GTAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACAT 2033 Query 26080 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACA 26139 ||||||||||||||| || |||| ||| | | || | | ||||| | ||| Sbjct 2032 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 1973 Query 26140 ATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 26199 || || | | | || ||||| || || ||||| || || | ||| ||||| || | | Sbjct 1972 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGT 1913 Query 26200 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTG 26259 ||||| || || | | ||| || ||| | || | || || || ||||| || ||| Sbjct 1912 GGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTG 1853 Query 26260 -TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 26318 |||| ||| | ||| | || | ||||||||| |||||||||| ||||| || ||||| Sbjct 1852 TTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGG 1793 Query 26319 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378 || || | || || || | |||| | | ||| || || | | ||||||||| | Sbjct 1792 AGCTGCGATGAAGGCGATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCATCAA 1733 Query 26379 TACCCCAAACCA 26390 || |||||||| Sbjct 1732 AACACCAAACCA 1721 >seq2365 Length=77851 Score = 230 bits (254), Expect = 7e-56 Identities = 311/434 (72%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 25935 || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || |||| | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 25936 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||||| |||||||| || || || || | ||||||||||||||||||||| ||||| ||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 25996 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 26055 | |||||| | ||||| |||||| || |||| |||||| ||||||| || ||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || ||| || || | || |||||||||| | || |||| ||| | Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | | ||||| | ||||| || | ||| || ||||| || || ||||| || Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || || | |||||||||| |||||||| || || | || | ||| || Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GGA 13535 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || || || ||||| || ||||||||||| ||||| | || | | |||||| || Sbjct 13534 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTGA 13475 Query 26296 ATACCATCTATATC 26309 |||||||| ||||| Sbjct 13474 ATACCATCAATATC 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151969036789284