Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq463 109 4e-19 seq990 107 2e-18 seq8279 87.8 1e-12 seq5666 87.8 1e-12 seq2169 87.8 1e-12 seq1245 87.8 1e-12 seq846 87.8 1e-12 >seq463 Length=196461 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | || | ||||| ||||| || || || ||||||||||| || Sbjct 43224 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 43165 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| || ||||| || | ||||| || || || || Sbjct 43164 AATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGG 43105 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || ||| || ||| | || | ||||| || | || || Sbjct 43104 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 43045 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | || || || || | ||| || ||||| ||||||||| Sbjct 43044 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 42997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| || || | || | | | || || | ||| Sbjct 42972 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGTGTGCGGCCGTCTTCAAGCTGC 42913 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | ||| || || || || ||||| ||||| || ||||| ||| Sbjct 42912 TTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGAATCTTT 42853 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||| | || || || | || | || ||||| || Sbjct 42852 GCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAATGTTATTGTCTTGCCTGTA 42793 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 42792 AGGGTCTTCACAAATATCTGCAT 42770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || |||||||| || | || | | |||| || | ||| Sbjct 42516 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTCTAGCTGC 42457 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || || || ||||| ||||| || Sbjct 42456 TTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGAATCTTG 42397 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | | | ||||| || | || || || ||||||| || ||||| || Sbjct 42396 GCCTTAACATTGTTGATCGTGTCCGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTC 42337 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 42336 AGTGTCTTGACGAATATCTGCAT 42314 >seq990 Length=138715 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| || || || ||||| || || | || | | |||| ||| Sbjct 23106 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 23165 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| |||| |||||| || || || || ||||| || || || || Sbjct 23166 AGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 23225 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | |||||||| | |||| || ||| Sbjct 23226 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTG 23285 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 23286 CCAGTAAGCGTCTTCACAAAGATCTGCAT 23314 >seq8279 Length=8219 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | || | ||||| ||||| || || || ||||||||||| || Sbjct 6959 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGC- 6901 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 |||| || | |||||| || ||||| || | ||||| || || | || Sbjct 6900 ----------CATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGTGGG 6851 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | ||||| || | || || Sbjct 6850 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 6791 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | || || || || | ||| || ||||| ||||||||| Sbjct 6790 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 6743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || |||||||| || | || | | |||| || | ||| Sbjct 6285 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTCTAGCTGC 6226 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || || || ||||| ||||| || Sbjct 6225 TTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGAATCTTG 6166 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| | || | || || || ||||||| || ||||| || Sbjct 6165 GCCTTAACATTGTCGATCGTGCCCGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTC 6106 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 6105 AGTGTCTTGACGAATATCTGCAT 6083 >seq5666 Length=23988 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || |||||||| || | ||||| |||| ||| Sbjct 18578 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATCTTCC 18637 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 18638 AATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 18697 Query 101381 A 101381 | Sbjct 18698 A 18698 >seq2169 Length=81208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || |||||||| || | ||||| |||| ||| Sbjct 76099 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATCTTCC 76158 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 76159 AATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 76218 Query 101381 A 101381 | Sbjct 76219 A 76219 >seq1245 Length=124263 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || |||||||| || || ||||| || | ||||| |||| ||| Sbjct 66863 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCC 66922 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 66923 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 66982 Query 101381 A 101381 | Sbjct 66983 A 66983 >seq846 Length=151982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || |||||||| || || ||||| || | ||||| |||| ||| Sbjct 29376 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCC 29435 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 29436 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 29495 Query 101381 A 101381 | Sbjct 29496 A 29496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396212673388413