Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq691 228 9e-55 seq7208 219 5e-52 seq2365 201 1e-46 seq160 145 8e-30 >seq691 Length=167025 Score = 228 bits (252), Expect = 9e-55 Identities = 345/486 (71%), Gaps = 5/486 (1%) Strand=Plus/Minus Query 162583 GCAACTTGCT--TCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCA 162640 ||||||| || | || || || ||||||||||| | |||| | ||||| |||||||| Sbjct 131194 GCAACTTCCTATTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTC 131135 Query 162641 GAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTC 162700 | | ||| || ||||| | || ||||| ||||| || |||||||||| | ||| Sbjct 131134 GCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTC 131075 Query 162701 CTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATG 162760 | | || || || || | || || || || || |||||||| ||| ||||||||| Sbjct 131074 CAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATG 131015 Query 162761 AGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCG-GAATC 162819 | ||||| || |||||||| |||| | || | || | || ||| | | | | | | Sbjct 131014 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGC 130955 Query 162820 ACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATC 162879 ||| || |||||| ||||||||||| || | | | ||||||| ||||||||| Sbjct 130954 TTGTTATA-TG-GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATT 130897 Query 162880 TGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTC 162939 ||||||||| || || || || | || || ||||| |||||| | || || || Sbjct 130896 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATC 130837 Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| ||||||||| | ||| || | || || ||||||||||| |||| ||| Sbjct 130836 GGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATG 130777 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA 163059 | || ||| | | ||||||||||||||| ||||| || || || ||| | || || || Sbjct 130776 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 130717 Query 163060 GGTGTA 163065 |||||| Sbjct 130716 GGTGTA 130711 >seq7208 Length=13341 Score = 219 bits (242), Expect = 5e-52 Identities = 409/597 (69%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||| ||||| |||||||||||| ||| | | ||| | || || || || || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTGTATTTATTATCGCC 1780 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||| ||||| |||||||| ||||| |||||||| || |||||| ||||| | Sbjct 1781 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTA 1840 Query 162664 CTCTAT-GGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCT 162722 | ||| | ||||| || ||||||||||| | ||||| ||| || || | | Sbjct 1841 ATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 1900 Query 162723 TCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACC 162782 || || || || | || ||||| ||| | ||||||| ||||| || |||||||| || Sbjct 1901 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 1960 Query 162783 TTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCA 162839 || | || | || | |||||| | | || | ||| | | | |||||| | Sbjct 1961 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGA 2017 Query 162840 GTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 162899 ||||||||| || | || |||| |||||||||||| |||| | || || | || Sbjct 2018 ATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCC 2077 Query 162900 AGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 162959 || | || || ||| | ||||| |||| ||| |||||||| ||| ||| | Sbjct 2078 TGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2137 Query 162960 CGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCA 163019 | ||| || | || || ||||||||||| |||| ||| || ||||| ||| |||| Sbjct 2138 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCA 2197 Query 163020 CAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACT 163079 ||||||||| | ||| || || || || | || || || ||||||||||| ||||| || Sbjct 2198 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CT 2256 Query 163080 CTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 || | ||||||||| |||| | || || ||| | | |||| || || ||||| Sbjct 2257 ATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq2365 Length=77851 Score = 201 bits (222), Expect = 1e-46 Identities = 334/480 (70%), Gaps = 22/480 (5%) Strand=Plus/Plus Query 162584 CAACTTGCT--TCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 |||||| || | || || || ||||| ||||| |||| | ||||| |||||||| Sbjct 13420 CAACTTCCTATTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCA 13477 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || ||| || ||||| | || ||||| ||||| || ||||||||||| | Sbjct 13478 CGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CA 13530 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 | ||| || | |||| || || || || || |||||| ||| |||||||||| Sbjct 13531 TTTTTCCAACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGA 13585 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || |||||||| |||| | || | || | |||||| | | || | Sbjct 13586 ATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT--- 13642 Query 162822 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 ||| | | | |||||| ||||||||||| || | | | ||||||| ||||||||| Sbjct 13643 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 13702 Query 162879 CTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTT 162938 ||||||| | || || || || || || || ||||| |||||| | || ||| | Sbjct 13703 TGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 13762 Query 162939 CGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACAT 162998 |||||||| ||||||||| | |||||| | || || ||||||||||| |||| || Sbjct 13763 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTAT 13822 Query 162999 GTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGC 163058 | | || ||| | | ||||||||||||||| ||||| || || || ||| | || || || Sbjct 13823 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 145 bits (160), Expect = 8e-30 Identities = 161/213 (76%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 163207 GGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCAC 163266 || || |||||||| || |||||||| ||||| |||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 163267 TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACT 163326 ||||| ||||| | ||||| || | |||||||||||||| | ||| | ||| Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 163327 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGT 163383 |||||||||||||| || |||||||| ||||||||||| || ||||| | |||| | Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG- 255306 Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416 || ||| ||||||||| |||||| | ||| Sbjct 255307 --CGTTATTAATACTTGGGCTGATATCATCAAC 255337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552990713361960