Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq7208 235 6e-57 seq691 223 4e-53 seq2365 197 2e-45 seq160 125 8e-24 >seq7208 Length=13341 Score = 235 bits (260), Expect = 6e-57 Identities = 449/652 (69%), Gaps = 11/652 (2%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAA-CA 163069 || || || ||||| || || | |||||| || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 | || ||||||||||| || |||| | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | || ||||| |||| ||||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | |||||| | | || | | |||||||| ||||||||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | || |||| ||| || ||||| ||| | || || | ||||||||||| || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | | ||| | |||| ||| |||||||| ||| ||| | | ||| | | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 ||||||| || ||||||| ||| ||| ||||| ||| ||||||||||||| | ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | || || || || || || |||||||| ||||| || || || ||| || |||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCAT- 2272 Query 163490 GCAGT--CTT-GTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC 163538 ||| ||| || |||||| | || | ||||| ||||||||||| || Sbjct 2273 --AGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 223 bits (246), Expect = 4e-53 Identities = 350/493 (71%), Gaps = 6/493 (1%) Strand=Plus/Minus Query 162967 TTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGAC 163026 ||| | |||||| || ||| || |||||||| | || || | || | || ||||| Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 163027 GGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCA 163086 || || || |||| | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 163087 GTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 163146 || ||||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 163147 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATC 163206 |||||||| ||| | || || |||||||||| | || | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 163207 G-GCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCGCT-TAGGTATGCGCC 163264 | | | || || |||||||| ||||| ||||||||| || || | | ||||||| | Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATC 130905 Query 163265 CCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCT 163324 | ||||| ||| ||||| || || ||||||||||| || | || || ||| || | | Sbjct 130904 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 130845 Query 163325 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCA 163384 | || |||||||||| ||||||||| | ||| | | || |||||||| || |||| Sbjct 130844 ACGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCA 130785 Query 163385 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGG 163444 ||| ||| |||| ||| | | ||||||||||||||| ||||| || || || ||||| | Sbjct 130784 ACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 130725 Query 163445 GAGTCGCTGGTGT 163457 | || |||||||| Sbjct 130724 GTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 197 bits (218), Expect = 2e-45 Identities = 336/483 (70%), Gaps = 17/483 (4%) Strand=Plus/Plus Query 162974 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCC 163033 ||||| || ||| || |||||||| |||| ||| || | || ||||| || || | Sbjct 13420 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 13476 Query 163034 GTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTC 163093 ||||| | |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 13477 ACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 13536 Query 163094 CATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATG 163153 || || | |||| || || || || || |||||| ||||| ||||||| Sbjct 13537 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 13584 Query 163154 AGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCT 163213 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 13585 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 13644 Query 163214 ATGCATATATGGGACGTGAATGGGAACTTTCATATCGCT-TAGGTATGCGCCCCTGGATC 163272 | |||||||| ||||| ||||||||| || || | | ||||||| || ||||| Sbjct 13645 CTTGTTATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATCCTTGGATT 13703 Query 163273 TGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTC 163332 ||| ||| | || || |||||| |||| || | || || ||| || | || ||| | Sbjct 13704 GCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 13763 Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 |||||||| ||||||||| | ||||| | || |||||||| || ||||||| ||| Sbjct 13764 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 13823 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452 |||| ||| | | ||||||||||||||| ||||| || || || ||||| || || ||| Sbjct 13824 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 Query 163453 GGT 163455 || Sbjct 13884 TGT 13886 >seq160 Length=286096 Score = 125 bits (138), Expect = 8e-24 Identities = 148/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 163600 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCAC 163659 || || || ||||| || |||||||||||||| ||||||||| | | | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 163660 TTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACC 163719 ||||| ||| || |||||||| || || |||||||| ||||| | || | || || Sbjct 255191 TTCTT---GGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 163720 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 163779 |||||||||||||| || |||||||| |||||||| || | ||||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 163780 GTGCTCAACACTTGGGCAGA 163799 || | || |||||||| || Sbjct 255308 GTTATTAATACTTGGGCTGA 255327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563113791006920