Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1263 219 8e-52 seq1353 215 1e-50 seq3117 210 4e-49 >seq1263 Length=124836 Score = 219 bits (242), Expect = 8e-52 Identities = 561/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | ||||| ||| Sbjct 20582 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTC 20523 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| |||||| | ||| Sbjct 20522 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGT--GGCCCAGCGCCATGAGC 20465 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | || Sbjct 20464 AGGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGC 20405 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || ||||| |||||| | ||||| || | || ||| Sbjct 20404 GCGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATC 20345 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| ||||| | | ||| ||| || | | | ||||| | ||||||| Sbjct 20344 TCGCGGACGCGCGACTCGTCGAGCTTGACGCGGAGAAGGTCG---TAGAGGAGGCAGGCA 20288 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| || ||||| ||| ||||||| |||||||||| ||| || ||| Sbjct 20287 AAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGC 20228 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | | ||||||||||| || || |||||| || || |||||||||||| Sbjct 20227 ATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCC 20168 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||||| ||| | |||||| || | | |||||| Sbjct 20167 TCGACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCA 20112 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | ||||| || ||||| | ||| ||| | ||||||||||| |||| Sbjct 20111 GCGCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGA 20056 Query 48372 A---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | | | | ||| ||| | |||| | ||||| |||||| | ||||| Sbjct 20055 ACAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 19999 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||| ||||| | ||||| || Sbjct 19998 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCA 19939 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | | | ||| ||||| ||||| || || || || | Sbjct 19938 CCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGG 19879 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| || || || || | ||| |||||||||| | || |||| || | || Sbjct 19878 CGAAGAAAGCTAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGTTGAGCGCGGCGTCCC 19819 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | |||||||| ||||| | || | Sbjct 19818 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAACGACGCCACCGCCT 19759 Query 48666 TTTTGTA 48672 | ||||| Sbjct 19758 TCTTGTA 19752 >seq1353 Length=118606 Score = 215 bits (238), Expect = 1e-50 Identities = 575/870 (66%), Gaps = 33/870 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 95693 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTC 95634 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCAT--CTGTTCCA 47954 ||| || ||| || |||| ||| |||| | | ||| | |||| | || | Sbjct 95633 CATCCAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGT--GCCCCAAAGCCATT--A 95578 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||||| | || |||||| |||||| ||| | ||| || | ||||||||| | || Sbjct 95577 GCAGGCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGA 95518 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| | || | || ||||| ||| || | ||||| || | || | Sbjct 95517 GTGCGCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGA 95458 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 ||| ||||||||||| | ||| ||| ||| | | | ||||| | ||| | Sbjct 95457 TCTCGCGGACGCGGGACTCGTCCAGCTTGACGCGGAGGAGGTCG---TAGAGAAGGCACG 95401 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || | Sbjct 95400 CGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTG 95341 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| ||| | | ||||||||||| || || ||| ||||| ||||||||||||| Sbjct 95340 GCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGC 95281 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 |||| || ||||||||| || | ||| | |||||| || | | |||| Sbjct 95280 CCTCGACGCAGGCGAACGCGACAAGACGCTCGGC----GAAGCGCTCGCCGCCCTCGATC 95225 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCG 48369 ||| | | ||| || ||||| | ||| ||| | |||||||||||| || Sbjct 95224 CAGCGCATGGTCCACTCGGCCTT----GCGGCGCACGGCGGGGACCGTCTCTATGGCTCG 95169 Query 48370 GAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||||||| | ||| ||| | |||| | ||||| |||||| | ||| Sbjct 95168 GAAGAGCCGGTCCTT---CTCCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTA 95112 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||| |||||||| || | ||||| Sbjct 95111 CATCTCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGC 95052 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||| || || | ||| | | | ||| ||||| || || || || || || Sbjct 95051 GACCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGC 94992 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATT 48603 || |||||||| || || || | ||| |||||||||| | |||| || | Sbjct 94991 GGCGAAGAAGGCGAGAACGTGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTC 94932 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | ||||| | |||||||| || || | |||||||| || || | || Sbjct 94931 CCAGTGCCGCACGTCGGCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGAAGCCACGGC 94872 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||||| | |||| || | ||| || Sbjct 94871 CTTCTTGTAGAACTCCCAGATCTGCGGGTA 94842 >seq3117 Length=57653 Score = 210 bits (232), Expect = 4e-49 Identities = 559/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | ||||| ||| Sbjct 29271 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTC 29212 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| | |||| | ||| Sbjct 29211 CATCCAGTCGAACGGGTTGGCCACGTTGTACATCTTCTTGTGA--CCCAGCGCCATGAGC 29154 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | || Sbjct 29153 AGGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGC 29094 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || ||||| |||||| | ||||| || | || ||| Sbjct 29093 GCGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATC 29034 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| ||||| | | ||| ||| || | | | ||||| | ||| ||| Sbjct 29033 TCGCGGACGCGCGACTCGTCGAGCTTGACGCGGAGAAGATCG---TAGAGGAGGCACGCA 28977 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| || ||||| ||| ||||||| |||||||||| ||| || ||| Sbjct 28976 AAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGC 28917 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | | ||||||||||| || || |||||| || || |||||||||||| Sbjct 28916 ATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCC 28857 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||||| ||| | |||||| || | | |||||| Sbjct 28856 TCGACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCA 28801 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | ||||| || ||||| | ||| ||| | ||||||||||| |||| Sbjct 28800 GCGCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGA 28745 Query 48372 A---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | | | | ||| ||| | |||| | ||||| |||||| | ||||| Sbjct 28744 ACAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 28688 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||| ||||| | ||||| || Sbjct 28687 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCA 28628 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | | | ||| ||||| ||||| || || || || | Sbjct 28627 CCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGG 28568 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| || || || || | ||| |||||||||| | || |||| || | || Sbjct 28567 CGAAGAAAGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGTTGAGCGCGGCGTCCC 28508 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | |||||||| ||||| | || | Sbjct 28507 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAACGACGCCACCGCCT 28448 Query 48666 TTTTGTA 48672 | ||||| Sbjct 28447 TCTTGTA 28441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931374334626560