Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1263 181 2e-40 seq3117 178 2e-39 seq1353 152 1e-31 >seq1263 Length=124836 Score = 181 bits (200), Expect = 2e-40 Identities = 397/576 (69%), Gaps = 24/576 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 19740 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTC 19799 Query 25537 GCCAAGGACATGGACGGCTGGTACGC-----TCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | | |||| |||| || | || ||||||| || || || Sbjct 19800 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTCAACCCC--GACGAGCGCCACTTCATCT 19857 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || ||||| || || |||||| |||||| ||| ||| | Sbjct 19858 CCCACGTGCTAGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTG-GCGTCG 19916 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| | ||||| | | ||| ||||| |||||||| || Sbjct 19917 CGGTTCATGTCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTT-TACGGCTTCCAGATCGC 19975 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 19976 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 20035 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || ||||| | ||||| ||| | | ||| | | | ||||| Sbjct 20036 CGCCGAGAAGGACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGC 20095 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| | || ||||||| || ||||||||| || | Sbjct 20096 CGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCG 20151 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| || || || || ||| |||||||||||||| Sbjct 20152 CGTTCGCCTGC-GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGC-GCCATCTTCTGGCT 20209 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | | || | |||| |||||| ||||| ||||||||||||||| | | ||| Sbjct 20210 CAAG-AAACGCGGCCTCATG-CCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGAC 20267 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| ||| | || ||||||||||| |||||| Sbjct 20268 GAGGGTCTGCACTGCGACTTTGCCTGCCTCCTCTAC 20303 >seq3117 Length=57653 Score = 178 bits (196), Expect = 2e-39 Identities = 396/576 (69%), Gaps = 24/576 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 28429 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTC 28488 Query 25537 GCCAAGGACATGGACGGCTGGTACGC-----TCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | | |||| |||| || | || ||||||| || || || Sbjct 28489 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTCAACCCC--GACGAGCGCCACTTCATCT 28546 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || ||||| || || |||||| |||||| ||| ||| | Sbjct 28547 CCCACGTGCTCGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTG-GCGTCG 28605 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| | ||||| | | ||| ||||| |||||||| || Sbjct 28606 CGGTTCATGTCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTT-TACGGCTTCCAGATCGC 28664 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 28665 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 28724 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || ||||| | ||||| ||| | | ||| | | | ||||| Sbjct 28725 CGCCGAGAAGGACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGC 28784 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| | || ||||||| || ||||||||| || | Sbjct 28785 CGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCG 28840 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| || || || || ||| |||||||||||||| Sbjct 28841 CGTTCGCCTGC-GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGC-GCCATCTTCTGGCT 28898 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | | || | |||| |||||| ||||| ||||||||||||||| | | ||| Sbjct 28899 CAAG-AAACGCGGCCTCATG-CCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGAC 28956 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| ||| | || ||||| ||||| |||||| Sbjct 28957 GAGGGTCTGCACTGCGACTTTGCGTGCCTCCTCTAC 28992 >seq1353 Length=118606 Score = 152 bits (168), Expect = 1e-31 Identities = 387/574 (67%), Gaps = 20/574 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 94851 ATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCTGGACCGCCGAGGAGGTGGACCTC 94910 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAG---ACGAGCAGCATTTTCTCA 25591 || ||| || |||| ||| |||| ||| | |||||| || || || Sbjct 94911 TCCGCCGACGTG--CGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCACTTCATCT 94968 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 |||| | || ||||| || || || || || || ||| |||||| ||| ||| | Sbjct 94969 CCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCTG-GCGTCG 95027 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| || ||||| | | ||| |||||| |||||||| || Sbjct 95028 CGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCGTT-CTACGGCTTCCAGATCGC 95086 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 ||| || || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 95087 CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 95146 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| |||| || ||||| || | ||||| ||| | ||| | | | ||||| Sbjct 95147 CGCGGAGAAGGACCGGCTCTTCCGAGCCATAGAGACGGTCCCCGCCGTGCGCCGCAAGGC 95206 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||| ||||| |||||| | || ||||||| || |||||| || || | Sbjct 95207 CGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGTCTTGTCG 95262 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| ||| || ||||| ||| |||||||||||||| Sbjct 95263 CGTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-GCCATCTTCTGGCT 95320 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| | ||| |||||| || || ||| ||||||||||||||| | | ||||| Sbjct 95321 CAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 95380 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| || ||| | || || || ||||| |||||| Sbjct 95381 GGGCCTGCACTGCGACTTCGCGTGCCTTCTCTAC 95414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928686791888960