Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq7208 306 4e-78 seq691 304 1e-77 seq2365 295 7e-75 seq160 102 8e-17 >seq7208 Length=13341 Score = 306 bits (338), Expect = 4e-78 Identities = 449/629 (71%), Gaps = 5/629 (1%) Strand=Plus/Plus Query 8269 ACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC 8328 ||||| ||| ||| || || | |||||||| ||| | |||||||| ||| || ||| | Sbjct 1698 ACCAAAAATGTCTT-TACATCCGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGAC 1755 Query 8329 -GCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCAT 8387 || || | || |||| ||| ||| | || |||||||| || || || || || || Sbjct 1756 TGCAACCTCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 1815 Query 8388 CCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAA-CAACATCATCTCTGGTGCAGTTG 8446 | || || ||| ||| ||| | || || | || ||| || ||||||||||| || Sbjct 1816 TCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTA 1875 Query 8447 TTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTG 8506 |||| ||| || || | | || || ||||| | || ||||| || | | ||| Sbjct 1876 TTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTG 1935 Query 8507 ATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCG 8566 |||| ||| | ||||| |||||||||| |||| | ||| | |||||| | ||||| | Sbjct 1936 ATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTG 1995 Query 8567 TCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGA 8626 | | ||||||||||||||||||||||||| || | | || | ||||||||||| Sbjct 1996 TAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGA 2055 Query 8627 TCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTT 8686 | |||| | || || |||||||||| |||||| | ||| | ||| | |||| ||| Sbjct 2056 TTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTA 2115 Query 8687 TTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATA 8746 ||||||||| || ||| |||||||| || | || ||||| ||||| ||||||| || Sbjct 2116 CTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTA 2175 Query 8747 TGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG 8806 || ||| |||||||| ||||||||||||| | ||| || || ||||| | ||||| | Sbjct 2176 TGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAG 2235 Query 8807 CTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGC 8866 ||||||| |||||||| || || || || |||||| |||| | || || ||| Sbjct 2236 CTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTT 2294 Query 8867 TGGTTCGTGAGACCACCGAAACCGAGTCT 8895 || | | |||||||| ||||| || ||| Sbjct 2295 TGCTCAGGGAGACCACTGAAACTGAATCT 2323 >seq691 Length=167025 Score = 304 bits (336), Expect = 1e-77 Identities = 352/473 (74%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| ||| ||| |||| || | ||| | || || || || || ||| | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 ||| ||| | | || || ||||| || |||||||||| || |||| | | | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 || || || | || || ||||| || |||||||| || ||||||||||| ||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATG 8580 || ||||||||||| |||| | ||| | || ||| | |||| ||| ||||||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTG-TTATATG 130945 Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||||||| ||||||||| || | | || || |||| ||||||||| ||||||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || ||||||||||| |||||| ||||||| ||| | | || || | |||||||| Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 ||||||||||||||| || | || ||||| ||||| ||||||| |||| |||| ||| || Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGT 8813 | |||||||||||||| ||||| || || |||||| | ||||| |||||||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 295 bits (326), Expect = 7e-75 Identities = 348/471 (74%), Gaps = 14/471 (3%) Strand=Plus/Plus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| ||| ||| | || ||| ||| | || || || || || | ||| || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 ||| ||| | | || || ||||| || ||||||||||| || |||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 | |||| || || ||||| || |||||| || ||||||||||| ||| | ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATG 8580 || ||||||||||| |||| | ||| | |||||| | ||||| || | ||||||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||||||| ||||||||| || | | || || |||| ||||||||| ||||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || ||||||||| | |||||| ||||||| ||| | | || ||| |||||||||| Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 |||||||||||||||||| | || ||||| ||||| ||||||| |||| |||| ||| || Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 | |||||||||||||| ||||| || || |||||| | ||||| ||| || Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 102 bits (112), Expect = 8e-17 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 8956 GGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCAT 9015 || || |||||||| || |||||||||||||| ||| ||||| ||| | || || Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACA- 255189 Query 9016 TTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACC 9075 |||| | ||||| |||||||| || || |||||||| || || | || | || Sbjct 255190 --CTTCTTGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 9076 ATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGA 9135 ||||| |||||||| ||||| ||||| |||||||| || | | || | ||||| || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 9136 GTGCTCAACACCTGGGCAGA 9155 || | || || ||||| || Sbjct 255308 GTTATTAATACTTGGGCTGA 255327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516392140296000