Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq317 114 8e-20 seq797 113 3e-19 seq253 113 3e-19 seq186 113 3e-19 seq48 113 3e-19 seq1770 109 4e-18 seq2076 105 4e-17 seq6491 104 2e-16 seq259 100 2e-15 seq463 95.1 8e-14 seq2370 93.3 3e-13 seq9375 89.7 3e-12 seq6151 89.7 3e-12 seq217 89.7 3e-12 seq1396 87.8 1e-11 seq1245 87.8 1e-11 seq846 87.8 1e-11 seq2056 86.0 4e-11 >seq317 Length=225498 Score = 114 bits (126), Expect = 8e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||||||||| |||||| | || ||||| || || |||||||| Sbjct 213798 GCTGTGATTACTGTTCCAGCATATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCA 213739 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||||| |||| | | ||||||||||||||||| ||||| || || Sbjct 213738 GGCCGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTG 213679 Query 474857 GCTTATGG 474864 ||||||| Sbjct 213678 TCTTATGG 213671 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 |||||| ||||||||||| ||||| ||| ||||| ||||| ||||| | | ||| Sbjct 213685 AGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCAATGCGGCCTGCATC 213744 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | || ||||| || ||||||||||| ||||| || || || ||||| ||||| || Sbjct 213745 TTTTGTGGCCTGACGCTGCGCATCATTGAAATATGCTGGAACAGTAATCACAGCCTT 213801 >seq797 Length=160493 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| |||||||||||||| |||||||| ||| | |||||| |||||||| Sbjct 15309 GCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAAAAGATGCT 15368 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| || |||||||| || || || | Sbjct 15369 GGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTGCATCATTG 15428 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| |||| ||||| Sbjct 15429 GCTTATGGCTTTGAGAAGAA 15448 >seq253 Length=256332 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| |||||||||||||| |||||||| ||| | |||||| |||||||| Sbjct 139100 GCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAAAAGATGCT 139041 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| || |||||||| || || || | Sbjct 139040 GGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTGCATCATTG 138981 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| |||| ||||| Sbjct 138980 GCTTATGGCTTTGAGAAGAA 138961 >seq186 Length=278655 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || |||||||||||||| || ||||| ||| | |||||| |||||||| Sbjct 150692 GCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAACAAAAGATGCT 150633 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | |||||||| ||||||||||| || || |||| Sbjct 150632 GGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTGCTGCATCACTG 150573 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| |||| ||||| Sbjct 150572 GCCTATGGTTTTGAGAAGAA 150553 >seq48 Length=407032 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || |||||||||||||| || ||||| ||| | |||||| |||||||| Sbjct 301466 GCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAACAAAAGATGCT 301407 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | |||||||| ||||||||||| || || |||| Sbjct 301406 GGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTGCTGCATCACTG 301347 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| |||| ||||| Sbjct 301346 GCCTATGGTTTTGAGAAGAA 301327 >seq1770 Length=95507 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | || ||||| || || |||||||| Sbjct 83136 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCA 83077 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||||| |||| | | ||||||||||||||||| ||||| || || Sbjct 83076 GGCCGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTG 83017 Query 474857 GCTTATGG 474864 ||||||| Sbjct 83016 TCTTATGG 83009 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 |||||| ||||||||||| ||||| ||| ||||| ||||| ||||| | | ||| Sbjct 83023 AGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCAATGCGGCCTGCATC 83082 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | || ||||| || ||||||||||| |||||||| || || ||||| ||||| || Sbjct 83083 TTTTGTGGCCTGACGCTGCGCATCATTGAAATAAGCTGGAACAGTAATCACAGCCTT 83139 >seq2076 Length=85219 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | || |||||||| || || ||||| Sbjct 69359 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAAGCCACAAAGGATGCA 69418 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || || ||||| | | || || ||||||||||||||||| || || Sbjct 69419 GGTCGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTG 69478 Query 474857 GCTTATGG 474864 ||||||| Sbjct 69479 TCTTATGG 69486 >seq6491 Length=17682 Score = 104 bits (114), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 |||||||||||||| ||||| |||||| | || |||||||| || || ||||| || | Sbjct 17680 ATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAAGCCACAAAGGATGCAGGTCGG 17621 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || || ||||| | | || || ||||||||||||||||| || || ||||| Sbjct 17620 ATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTGTCTTAT 17561 Query 474863 GG 474864 || Sbjct 17560 GG 17559 >seq259 Length=246582 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||||||||||| || ||| |||| |||||||| || || ||||| Sbjct 38165 GCAGTGGTTACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCCACAAAGGATGCA 38106 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | | || || ||||| ||||||||||| || | Sbjct 38105 GGCCGCATTGCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCAACAGCAGCTGCTTTG 38046 Query 474857 GCTTATGG 474864 ||||||| Sbjct 38045 TCTTATGG 38038 >seq463 Length=196461 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||| ||||| ||| || || | ||| |||||||| | || | Sbjct 43215 AGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGC 43156 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || |||||||| |||||||| || || || || || || || || || |||||| Sbjct 43155 CCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCTTCC 43096 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || |||||| || ||| || || || || | | | | || ||||| || Sbjct 43095 TTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAA-CCTCAAGAGT 43037 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || ||||||||||| || || || || Sbjct 43036 AATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTG 43001 >seq2370 Length=76838 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || || || || || || || ||||| || || ||||| Sbjct 12795 ACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGT 12736 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| || || || | || || ||||| || || || Sbjct 12735 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 12676 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| || || | | | | || | ||| Sbjct 12675 CTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCT-CAA 12617 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || |||||||| ||||||||||| || || Sbjct 12616 GGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTG 12577 >seq9375 Length=4316 Score = 89.7 bits (98), Expect = 3e-12 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | |||||| ||| | |||| || || |||||||||||| | |||||||| Sbjct 4032 GCAATACTCCATGGTACACCTAACTCAT-CAATGTTAATATTTGGATCTGGGGTGATAAC 4090 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 ||| || | || | ||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 4091 TGTGCGGGCTGAGAAATCAACACGCTTGCCCATCAAGTTCCCTCTAATACGGCCTTCTTT 4150 Query 321908 T 321908 | Sbjct 4151 T 4151 >seq6151 Length=20119 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| || || || ||||| || || | || || || || |||| Sbjct 13446 ATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 13505 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | ||||| || ||||| ||||| || || || Sbjct 13506 CTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATCAATGAGCCAACTGCTGCTGCTA 13565 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||||| || ||||| Sbjct 13566 TTGCTTATGGTCTCGACAAGAA 13587 >seq217 Length=261035 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| || || || ||||| ||||| | || || || || |||| Sbjct 170589 ATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 170648 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 |||| ||||| ||||| ||||| | ||||| || ||||| || || || || || Sbjct 170649 CGGGTGTGATTGCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTA 170708 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 170709 TTGCCTATGGTCTTGACAAGAA 170730 >seq1396 Length=117433 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || || ||||| ||||| | || || || || |||||||| ||| Sbjct 111666 ACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCGGGTGTGATT 111607 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| ||||| | ||||| || ||||| || || || || || |||| |||||| Sbjct 111606 GCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTATTGCCTATGGT 111547 Query 474866 CTTGATAAGAA 474876 ||||| ||||| Sbjct 111546 CTTGACAAGAA 111536 >seq1245 Length=124263 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| |||||||| ||||| || ||||||||||||| ||||| |||||| | Sbjct 66865 CAAG-TGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCCA 66923 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||| ||||||||||| || | ||| || || || ||||| || |||||||| |||| Sbjct 66924 ATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAA 66983 >seq846 Length=151982 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| |||||||| ||||| || ||||||||||||| ||||| |||||| | Sbjct 29378 CAAG-TGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCCA 29436 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||| ||||||||||| || | ||| || || || ||||| || |||||||| |||| Sbjct 29437 ATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAA 29496 >seq2056 Length=85062 Score = 86.0 bits (94), Expect = 4e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | |||||| || | ||||| || || |||||||||||| | ||||||||| Sbjct 46448 GCAATACTCCATGGTACTCCCAATTCAT-CAATGTTAATATTTGGATCTGGTGTGATAAC 46390 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 || || | || | ||||||||| || ||||| | || ||||||||| | |||||||| Sbjct 46389 CGTTCGGGCTGAGAAATCAACACGCTTGCCCATCAAGTTCCCTCTAATAAGGCCTTCTTT 46330 Query 321908 T 321908 | Sbjct 46329 T 46329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267595443959132