Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq691 271 8e-68 seq7208 269 3e-67 seq2365 237 2e-57 seq160 158 1e-33 >seq691 Length=167025 Score = 271 bits (300), Expect = 8e-68 Identities = 347/474 (73%), Gaps = 3/474 (1%) Strand=Plus/Minus Query 160969 TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTC 161028 || || || |||||| ||| || | || | || || || || ||||| | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 161029 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 161088 |||||| | | ||||||||||| || |||||||||| |||| || ||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148 || ||||| |||| || ||||| || |||||||| ||| ||| || |||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG-GCATCTATGCTTACAT 161207 || |||||||||| | || |||| | || ||| | ||| | | || || ||| || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 130946 Query 161208 GGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATA 161267 ||||||||||||||||||| || | ||||||| |||| |||||||||| || ||||| Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 161268 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 161327 || |||||||| || || || | ||| || ||| || | || || |||||||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 161328 TTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCA 161387 ||||||||||| ||| || | || ||||||||||| ||||||| ||| |||| ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 161388 AGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 161441 | |||||||||||| || ||||| || || || ||| | || ||||| ||||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq7208 Length=13341 Score = 269 bits (298), Expect = 3e-67 Identities = 434/617 (70%), Gaps = 5/617 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||| | | || || ||| | || | ||||| | | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | |||| ||| | ||| || || || |||||| | | ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAA-CA 161053 || || || || || || |||| ||| || || |||||| | || ||| |||| || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | || ||||||||||| |||| |||| |||| || ||| | |||| || ||||| Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | || ||||| ||| | | || |||||| | ||||| |||||||||| | || ||| Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | | |||||| | |||| | | ||| ||||||||||| ||||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 || |||| | ||||||||||||| || | || || ||||||| || || || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | | ||| | |||| ||| |||||||| ||| ||| ||| ||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 |||||||||| ||||||| ||| ||| ||||| ||| |||||||||| || | ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | || || || | || ||||| ||||| || |||||||| || |||| ||| ||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATA 2273 Query 161474 GTTCGCTGGTTACCTCT 161490 |||| |||| |||||| Sbjct 2274 GTTCCTTGGTAACCTCT 2290 >seq2365 Length=77851 Score = 237 bits (262), Expect = 2e-57 Identities = 295/405 (73%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 161031 TGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGC 161090 |||||| | | ||||||||||| || ||||||||||| | || ||| ||| | Sbjct 13490 TGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAACTC 13542 Query 161091 TATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAA 161150 || |||| || ||||| || |||||| ||| ||| || |||||| | ||||| Sbjct 13543 GAT-----TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAA 13597 Query 161151 CGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGG 161210 |||||||||| | || |||| | |||||| | |||| | | ||| ||||| Sbjct 13598 TGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGG 13657 Query 161211 TCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTC 161270 |||||||||||||||| || | ||||||| |||| |||||||||| || ||| | || Sbjct 13658 TCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTC 13717 Query 161271 TGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTT 161330 |||||||| | || || | ||| || ||| || | || ||| | |||||||| ||| Sbjct 13718 AGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTT 13777 Query 161331 CTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGC 161390 |||||||| |||||| | || ||||||||||| ||||||| ||| |||| ||| | | Sbjct 13778 CTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGT 13837 Query 161391 AGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGC 161435 |||||||||||| || ||||| || || || ||| | || ||||| Sbjct 13838 AGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 158 bits (174), Expect = 1e-33 Identities = 163/213 (77%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 161582 ACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGC 161641 |||| || || ||||| | || |||||||| ||| ||||||||||| || || | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 161642 ACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 161701 ||||||| ||||| |||||||| || || |||||||||||||| | || | || | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 161702 CCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTA 161761 | |||||||||||||| ||||||||||| |||||||| ||| | |||||||| || ||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 255305 Query 161762 AAGTTATCAACACCTGGGCAGACGTTCTCAACC 161794 ||||| || || ||||| || | |||||| Sbjct 255306 GCGTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547654021354440