Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq691 230 7e-56 seq7208 219 1e-52 seq2365 210 7e-50 >seq691 Length=167025 Score = 230 bits (254), Expect = 7e-56 Identities = 341/477 (71%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || |||||||||||||| ||||| || | | ||| Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || ||||||||||| || || | || |||||||||||||||||| || Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| || | || |||| | ||||| || | || | |||||||| || || || ||||| Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 130888 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || ||||||| || | || |||||||||| | || ||||| Sbjct 130889 GCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATA 130948 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | | | || || || | ||||| || | ||| || || || || ||| Sbjct 130949 TAACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 131007 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || || | |||||||||||| |||||||| || || | ||||| || | Sbjct 131008 AACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCA 131067 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 | | || | || | || || || || ||||||||||| ||||| | || | | | Sbjct 131068 CAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATA 131127 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||| ||||||||||| || || | ||| | || |||| || || || | |||| Sbjct 131128 GGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 131184 >seq7208 Length=13341 Score = 219 bits (242), Expect = 1e-52 Identities = 385/555 (69%), Gaps = 8/555 (1%) Strand=Plus/Minus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2271 TGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2213 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||| ||||||| ||||| | || |||||||| ||| || ||||||||||| || Sbjct 2212 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATT 2153 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGA--GAAATA-CT 18398 || | || |||||||| ||| ||||| ||||| ||| ||| || | | ||||| || Sbjct 2152 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCT 2093 Query 18399 GAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGT 18458 | |||||||| || || | ||||| | |||| |||||| || ||| |||| | Sbjct 2092 G---TAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAA 2036 Query 18459 CTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAAC 18518 | ||||||||||||||| || ||||| ||| || | || | | ||||| | Sbjct 2035 CATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 1976 Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| || | | | || || || || |||||||| || || | ||| ||||| || Sbjct 1975 ACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAA 1916 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 | |||||| || || | | ||| || ||| | || | || || || || || || Sbjct 1915 AGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATA 1856 Query 18639 TTG-TTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGG 18697 ||| |||| ||| | ||| | || | ||||||||| |||||||||| || || || || Sbjct 1855 TTGTTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGG 1796 Query 18698 AGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 |||||| || | || || || | |||| | | | ||| || || | | ||||||||| Sbjct 1795 AGGAGCTGCGATGAAGGCGATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCAT 1736 Query 18758 AAGTACCCCAAACCA 18772 | || |||||||| Sbjct 1735 CAAAACACCAAACCA 1721 >seq2365 Length=77851 Score = 210 bits (232), Expect = 7e-50 Identities = 311/436 (71%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 18258 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAAC 18317 || ||||| | ||| || || |||||||||||||| ||||| || | | |||||| | | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 || || ||||||||||| || || | ||||||||||||||||||||| ||||| ||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 18378 AAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACAC 18435 | ||| |||| | ||||| || | || | ||||||| || || || |||| |||||| Sbjct 13762 ATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGAAACAGGAGCTGAATTTGCAACAG 13705 Query 18436 AAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTG 18495 |||||| || ||||||| || | || |||||||||| | || ||||| ||| | Sbjct 13704 CAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAG 13645 Query 18496 CGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACT 18555 | | || | | ||||| | ||||| || | ||| || || || || |||||||| | Sbjct 13644 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 13585 Query 18556 CGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACG 18615 | || || | |||||||||| |||||||| || || | || | ||| | Sbjct 13584 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------G 13537 Query 18616 GGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCAC 18675 | | || || || || || || ||||||||||| ||||| | || | | |||||| Sbjct 13536 GAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGT 13477 Query 18676 GAATACCATCTATGTC 18691 |||||||||| || || Sbjct 13476 GAATACCATCAATATC 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151293945906246