Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq7208 233 2e-56 seq691 201 1e-46 seq2365 192 7e-44 seq160 87.8 2e-12 >seq7208 Length=13341 Score = 233 bits (258), Expect = 2e-56 Identities = 420/606 (69%), Gaps = 6/606 (1%) Strand=Plus/Minus Query 103510 AGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAG 103568 ||||||||||||||| ||||| | || | | | || || |||| |||| ||||||| Sbjct 2323 AGATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAG-GAACTATGCATAG 2265 Query 103569 CACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGA 103628 || |||| || ||||| ||||| || ||||| || || | ||||| || || ||| | | Sbjct 2264 CATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAA 2206 Query 103629 GAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAG 103688 | ||||| || | || ||||| || ||| ||||||| || || || || || |||| Sbjct 2205 GGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAG 2146 Query 103689 GCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAG 103748 |||| ||| || || ||||||||| ||||||| ||||| | || | |||| Sbjct 2145 CCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAG 2086 Query 103749 CCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACA 103808 | |||||||||| || || | ||| ||||| || ||| | |||| || | | Sbjct 2085 CTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAA 2026 Query 103809 ATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTT 103868 |||||| ||||| |||||||| | | |||| | |||||| | || | || | Sbjct 2025 GTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCT 1966 Query 103869 GGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGA 103928 |||||||||| || || | ||| ||||||| | |||| ||||| |||| || || | Sbjct 1965 CACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAA 1906 Query 103929 AGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTG-TTACCG 103987 | || | | || || || | |||| || ||||||||||| || ||| || | Sbjct 1905 AATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTA 1846 Query 103988 TACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCT 104047 || || | |||||| || || ||| |||| || || ||||| || ||||| ||||| Sbjct 1845 TAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCG 1786 Query 104048 ACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACC 104106 | ||| || | || || |||| |||||| | ||| | || |||||||||| ||||| Sbjct 1785 ATGAAGGCGATAATAAATACAGA-GGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1727 Query 104107 GAACCA 104112 ||||| Sbjct 1726 AAACCA 1721 >seq691 Length=167025 Score = 201 bits (222), Expect = 1e-46 Identities = 326/465 (70%), Gaps = 3/465 (1%) Strand=Plus/Plus Query 103592 ACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAG 103651 || ||||| || || | |||||| || || ||||| || ||||| || || | | ||| Sbjct 130712 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAAT 130771 Query 103652 ACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCT 103711 || | ||| ||||||| || || || || || |||| |||| |||| ||||| ||| Sbjct 130772 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCT 130831 Query 103712 TGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCG 103771 ||||| | | ||| | |||||| || || | ||||| ||||||||||| || ||||| Sbjct 130832 TGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 130891 Query 103772 ACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATAT 103831 ||| ||||| || |||| ||||||| | | | |||||||||||| |||||||| Sbjct 130892 ACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA- 130950 Query 103832 GCATAGATGC-CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAG 103890 || || | | ||| | ||| || | || | || | |||||||||| || || | Sbjct 130951 ACA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 131009 Query 103891 CCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGA 103950 ||| |||||||||||||| ||||||||||| || || || || | || || || | Sbjct 131010 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 131069 Query 103951 GGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGG 104010 | |||| || |||||||||| || ||||| || || | | |||||| | || Sbjct 131070 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 131129 Query 104011 TTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGC 104055 | ||||| || || ||||| | ||| | ||||| | ||| || Sbjct 131130 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGC 131174 >seq2365 Length=77851 Score = 192 bits (212), Expect = 7e-44 Identities = 303/435 (70%), Gaps = 12/435 (3%) Strand=Plus/Minus Query 103597 AGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAG 103656 ||| || || | |||||| || || ||||| || ||||| || || | | ||| || | Sbjct 13883 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 13824 Query 103657 CATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACC 103716 ||| ||||||| || || || || || ||||||||| |||| ||||| |||||||| Sbjct 13823 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 13764 Query 103717 AAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACA 103776 || ||||| | |||||| || || | ||||| | ||||||||| || | ||| ||| Sbjct 13763 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 13704 Query 103777 GATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATA 103836 ||||| || |||| ||||||| | | | |||||||||||| |||||||| | Sbjct 13703 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 13644 Query 103837 GATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTC 103896 | |||| | |||||| | || | || | |||||||||| || || | ||| || Sbjct 13643 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 13584 Query 103897 ATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGG 103956 |||||||||||| |||||| ||| || || || || |||| | ||| || Sbjct 13583 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GG 13536 Query 103957 AACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACG 104016 || || ||||||||||| || ||||| || || | | |||||| | || || | Sbjct 13535 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTG 13476 Query 104017 AATGCCGTCGATATC 104031 ||| || || ||||| Sbjct 13475 AATACCATCAATATC 13461 >seq160 Length=286096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 103239 ggTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGT 103298 |||||| | || ||||| || || | || ||||| || | ||||| | || |||| Sbjct 255338 GGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGT 255279 Query 103299 TGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGA 103358 |||| ||||| || || |||||||| ||||| || |||| ||| | || |||||||||| Sbjct 255278 TGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGA 255219 Query 103359 TACCCACTACTGG 103371 | || ||||| || Sbjct 255218 TCCCTACTACAGG 255206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633405831417720