Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq691 210 6e-50 seq2365 190 6e-44 seq7208 174 5e-39 seq160 122 3e-23 >seq691 Length=167025 Score = 210 bits (232), Expect = 6e-50 Identities = 336/481 (70%), Gaps = 1/481 (0%) Strand=Plus/Plus Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 ||||| ||| || || ||||| | ||||||||| ||||||||||| || |||||||| Sbjct 130704 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 130763 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||| ||| || | ||| ||||||| || || || || || || | |||| ||||||| | Sbjct 130764 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 130823 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || || | | |||| | ||| |||||||| ||||| || |||||||| | Sbjct 130824 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 130883 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || ||| || || | | ||||||||||||| || | Sbjct 130884 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 130943 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| ||| ||| | ||| || | || | || | | ||||| || | Sbjct 130944 CCATATAA-CAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCAT 131002 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| | |||||||||||| | |||||||||||||||||||| || || | |||||| | Sbjct 131003 TGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCG 131062 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | || | |||| | | | || || || || ||||| ||||| | | || ||| Sbjct 131063 CCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAA 131122 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 | || | || || ||||| || || | || | || ||| ||||||||||||| Sbjct 131123 AAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAA 131182 Query 22360 A 22360 | Sbjct 131183 A 131183 >seq2365 Length=77851 Score = 190 bits (210), Expect = 6e-44 Identities = 243/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| | ||||||||| ||||||||||| || |||||||| ||| ||| || | | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 || ||||||| || || || || || || |||||| ||||||| ||| || || ||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || |||| | ||| |||||||| ||||| | |||||||| || | |||||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || ||| || || | | ||||||||||||| || ||||| ||| | Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | |||||| | || | || | | ||||| || ||||| | ||||||| Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 ||||| | ||||||||| ||||||||| || || Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG 13548 >seq7208 Length=13341 Score = 174 bits (192), Expect = 5e-39 Identities = 394/587 (67%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACA--AACTCCCACCAAATACGCCGGCCA 21897 || || |||| | || ||||||||| ||| | ||| | || ||||| || || | Sbjct 2289 GAGGTTACCAAGGAACTATGCATAGCATTGAATAGGAAC---CGCCGAATACACCAGCTA 2233 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 |||| | |||||||| |||||| |||| || ||||||| |||||||| || ||| Sbjct 2232 CACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAA 2173 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 ||||||| || || || || || || | |||| ||| ||||||| || || ||| | Sbjct 2172 AGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAG 2113 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 | || | | ||| | ||| || ||||| || ||||||| || || | ||||| |||| Sbjct 2112 GGTAGATTAAGAAAATAGCTGTAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCC 2053 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGC 22137 | || | | | || | | | ||||||||||| || || ||||| ||| | || | Sbjct 2052 AAGGACGCGTACCCAAACATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACAC 1993 Query 22138 CAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 ||| | |||||| | || | || | | ||||| || ||||| | ||||||||||| Sbjct 1992 CAAGTAAGAAGTGTAGAACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAA 1933 Query 22198 GTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGA 22257 || ||||| |||| |||||| || || | || ||| || | |||| | Sbjct 1932 CAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAA 1873 Query 22258 CGGCTCCTGATATGATGTTG-TTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATT 22316 ||| || || || || ||| || | ||| | | || ||| || || || | || Sbjct 1872 TGGCACCAGAGATAATATTGTTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATA 1813 Query 22317 CCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC-GGC 22375 ||||| || || || || || || | | |||||||||||||| || || || | | Sbjct 1812 CCATCAATATCTACTGGAGGAGCTGCGATGAAGGCGATAATAAATACAGAGGTTGCAGTC 1753 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGAC 22422 || ||| | || ||||| | || || ||||||| | ||||||| Sbjct 1752 AATAAGGTA-GGGATCATCAAAACACCAAACCATCGGATGTAAAGAC 1707 >seq160 Length=286096 Score = 122 bits (134), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 21587 AGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGC 21646 ||||||||| || ||||||||||| | |||||| ||||| ||| | || | |||| Sbjct 255286 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 255227 Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706 ||||| || ||||| |||||||||||||| ||||| || | | ||| || || || Sbjct 255226 GAACCAGATCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTT 255170 Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGT 21747 || ||||||||||||||||| | ||||||||||| |||| Sbjct 255169 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGT 255129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146184371782020