Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq446 100 1e-16 seq4598 95.1 6e-15 seq8286 91.5 7e-14 seq6533 91.5 7e-14 >seq446 Length=200473 Score = 100 bits (110), Expect = 1e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 90964 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 90905 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 90904 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 90845 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||||| || ||||||||| ||||| |||| || | ||||| || Sbjct 90844 GAATATTGTGAGCTGAAACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 90785 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 90784 TCAGGGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 90745 >seq4598 Length=35162 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 34293 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 34352 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 34353 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 34412 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||| | || ||||||||| ||||| |||| || | ||||| || Sbjct 34413 GAATATTGTGAACTGAAACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 34472 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 34473 TCAGGGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 34512 >seq8286 Length=8159 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 988 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 929 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 928 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTGGCTC 869 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||| | || ||| ||||| ||||| |||| || | ||||| || Sbjct 868 GAATATTGTGAACTGAAACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 809 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 808 TCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 769 >seq6533 Length=17200 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 989 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 930 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 929 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 870 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||| | || ||| ||||| ||||| |||| || | ||||| || Sbjct 869 GAATATTGTGAACTGAAACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 810 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 809 TCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252998030864675