Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq691 237 2e-57 seq7208 233 2e-56 seq2365 230 3e-55 seq160 107 2e-18 seq1331 89.7 6e-13 seq1703 86.0 7e-12 >seq691 Length=167025 Score = 237 bits (262), Expect = 2e-57 Identities = 330/461 (72%), Gaps = 1/461 (0%) Strand=Plus/Plus Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || |||||||| || ||||| |||||| | | ||| || Sbjct 130715 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACA 130774 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | |||||||||||||||||| ||||| || | | ||||||||||||||| || ||| Sbjct 130775 ATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCTTGA 130834 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | | ||| | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 130835 CCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 130894 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 ||||||||| |||| || | | | | |||||||||| | ||||| || Sbjct 130895 GCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAA 130954 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | || | ||| ||| || | || | | || ||||||||||||||| || |||||| Sbjct 130955 GCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 131013 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 ||||||| || ||| |||||||| |||||||| || || | |||||| || | | | Sbjct 131014 TCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAAGTT 131073 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||||| || ||||| ||||| | |||||||| | || | Sbjct 131074 GGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTTG 131133 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGC 124929 | || || || ||||| | ||| | |||||||| || || Sbjct 131134 CGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGC 131174 >seq7208 Length=13341 Score = 233 bits (258), Expect = 2e-56 Identities = 396/567 (70%), Gaps = 5/567 (1%) Strand=Plus/Minus Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTG 124481 || |||| |||| |||||| || ||||| || || ||||| | || ||||| ||| Sbjct 2284 TACCAAG-GAACTATGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTA 2227 Query 124482 CCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGA 124541 ||||| || |||||| | || ||||| |||| ||| ||||| || ||||||||||| Sbjct 2226 AGATGTGAAATGGATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGA 2167 Query 124542 AAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATA 124601 ||||||| ||||| || | | |||||||| ||| || || |||||| ||||| | Sbjct 2166 AAGTACCAGAGATTCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGA 2107 Query 124602 CTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGAC 124661 |||||| | ||| ||||| | || || | |||||| | |||| |||||||||| Sbjct 2106 TTAAGAAAATAGCTGTAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGAC 2047 Query 124662 GCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAA 124721 || | || || | | |||||||| | | ||||| || | | ||||| | Sbjct 2046 GCGTACCCAAACATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTA 1987 Query 124722 GGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTG 124781 |||||| | || | | || | ||||||||||||| || ||||||||||||||| || Sbjct 1986 AGAAGTGTAGAACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATG 1927 Query 124782 CTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCAC 124841 | ||||| || | |||||| || || | || ||| || || | |||| || |||| Sbjct 1926 CCGCTTCTCAAAGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCAC 1867 Query 124842 CAGAGATGATGTTG-TTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCG 124900 ||||||| || ||| || | ||| | |||||||| || || || || || || Sbjct 1866 CAGAGATAATATTGTTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCA 1807 Query 124901 ATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAA 124959 ||||| || ||||| ||||| || || || | || || ||| | | ||| || | ||| Sbjct 1806 ATATCTACTGGAGGAGCTGCGATGAAGGCGATAATAAATACA-GAGGTTGCAGTCAATAA 1748 Query 124960 GCATGGAATCATTAGAACACCAAACCA 124986 | || ||||| | |||||||||||| Sbjct 1747 GGTAGGGATCATCAAAACACCAAACCA 1721 >seq2365 Length=77851 Score = 230 bits (254), Expect = 3e-55 Identities = 293/404 (73%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAAC 124531 ||||| ||| |||||| || |||||||| || ||||| |||||| | | ||| || | | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCA 124591 ||||||||||||||||| ||||| || | ||||||||||||||||| || |||||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 124592 AATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAG 124651 | ||||| | ||||| ||||| ||||| || || || ||||||| |||||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 124652 ATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAA 124711 ||||||||| |||| || | | | | |||||||||| | ||||| || | Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 124712 ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCA 124771 | ||||| | |||||| | || | | || ||||||||||||||| || ||||||||| Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 124772 TCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGA 124831 |||| || ||| |||||| |||||||| || || | | ||| | |||| Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCAAT-CGA-----------GTTGGA 13535 Query 124832 ACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 | || ||||||||||| || ||||| ||||| | |||||||| Sbjct 13534 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 13491 >seq160 Length=286096 Score = 107 bits (118), Expect = 2e-18 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || |||||||| || ||||||||||| | |||||||||||| || | ||||| Sbjct 255295 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 255236 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | | ||| ||||| | | || |||||||| | | | Sbjct 255235 TAAAGCAGTGAACCAGATCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACG 255179 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGT 124325 ||||||||||| |||||| |||||||| | |||||||| ||||||| Sbjct 255178 AGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGT 255129 >seq1331 Length=117103 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | ||||||||| || || ||||||||||| || |||||||| || Sbjct 72878 ACACCAATAGGGCCCATGCCAGGACCACCTCCGCCATGTGGAATGCAAAATGTCTTGTGC 72819 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || |||||||| ||| | || ||| ||| || || |||||| Sbjct 72818 AGGTTAAGATGGCAAACATCTGCTCCAATGAAACCTGGGCTTGTTAACCCAACCTGT 72762 >seq1703 Length=99802 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||||| || || ||||||||||| || |||||||| || Sbjct 59835 ACACCAATAGGGCCCATTCCAGGACCACCTCCGCCATGTGGAATGCAAAATGTCTTGTGC 59776 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || |||||||| ||| | || ||| ||| || || |||||| Sbjct 59775 AGGTTAAGATGGCAAACATCTGCTCCAATGAAACCTGGGCTTGTTAACCCAACCTGT 59719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578899905134680