Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq691 284 2e-71 seq7208 277 2e-69 seq2365 248 1e-60 seq160 141 1e-28 >seq691 Length=167025 Score = 284 bits (314), Expect = 2e-71 Identities = 359/487 (74%), Gaps = 5/487 (1%) Strand=Plus/Plus Query 27139 GATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGT 27198 ||| |||| ||| ||||| ||||| | |||||| || || ||||||||||| ||||| Sbjct 130700 GATGCACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGC 130759 Query 27199 TCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCG 27258 ||| ||| |||||||| ||| |||| |||||||||||||| || | || |||| |||| Sbjct 130760 TCTACCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCA 130819 Query 27259 GAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGA 27318 |||||| |||||||||| || || | | ||| || ||| | ||||| || || ||| Sbjct 130820 GAGAAACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGA 130879 Query 27319 GCAGAATATGCTACACAGATCCATGGACGCATACCTAAAC-GATATGAGAGTTCCCACTC 27377 || |||||||| ||| ||||| ||| ||||||| | || || || | ||||||||||| Sbjct 130880 GCTGAATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTA-AGTTCCCACTC 130938 Query 27378 ACGTCCCATATAAGCATAGATGC-CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGAC 27436 ||| ||||||||| || || | | | | | ||| || | || | || | |||||| Sbjct 130939 ACGACCCATATAA-CA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGAC 130996 Query 27437 CACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGAC 27496 |||| || || ||||| ||||| || ||||| |||||||| |||||||| || || | | Sbjct 130997 CACCATTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATC 131056 Query 27497 CGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTG 27556 |||| || || |||| | || ||||||| || || ||||| ||||| | | | Sbjct 131057 CGATCGCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAG 131116 Query 27557 AACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGA 27616 ||||| || || | |||||||| |||||||| | || | ||||| ||||| |||| Sbjct 131117 AACCAAAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 131176 Query 27617 CAATGAA 27623 ||| || Sbjct 131177 TAATAAA 131183 >seq7208 Length=13341 Score = 277 bits (306), Expect = 2e-69 Identities = 427/604 (71%), Gaps = 4/604 (1%) Strand=Plus/Minus Query 27070 GACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCA 27129 || ||||||||||| ||||| | || | ||| || |||| | ||||||||| Sbjct 2322 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2263 Query 27130 GAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGG 27189 ||| || || || |||||||| ||||| ||||| | ||||| || || ||| ||||| Sbjct 2262 TTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2204 Query 27190 ATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGC 27249 || ||||| | ||||||||||||| ||| |||| |||||||||||||| || | || | Sbjct 2203 ATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2144 Query 27250 ATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCA 27309 ||| ||| || ||| |||||||| ||| |||| | ||| | || | ||||| Sbjct 2143 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCT 2084 Query 27310 GCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGT 27369 || || |||| ||||| | ||| ||||| |||||| |||| |||| | ||| Sbjct 2083 GCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAAGT 2024 Query 27370 TCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGG 27429 ||||| ||||| ||||||||| | | || | | |||||| | || | || | Sbjct 2023 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 1964 Query 27430 AAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAG 27489 |||||||||| || || ||||| ||||| | |||| ||||| || | |||||| || Sbjct 1963 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 1904 Query 27490 TGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTG-TTGCCATA 27548 || | | ||| || ||| || | || |||||||| || || ||| || | ||| Sbjct 1903 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATA 1844 Query 27549 CATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGAT 27608 || | |||||| ||| || ||| ||||||| |||||||| || || || |||||||| Sbjct 1843 AATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGAT 1784 Query 27609 GAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGA 27667 ||| |||| ||| || |||| ||||| | || | || |||||||||| ||||| | Sbjct 1783 GAAGGCGATAATAAATACAGA-GGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAA 1725 Query 27668 ACCA 27671 |||| Sbjct 1724 ACCA 1721 >seq2365 Length=77851 Score = 248 bits (274), Expect = 1e-60 Identities = 338/469 (72%), Gaps = 16/469 (3%) Strand=Plus/Minus Query 27156 AGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAG 27215 ||| ||||| | |||||| || || ||||||||||| ||||| ||| ||| |||||||| Sbjct 13883 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 13824 Query 27216 CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 ||| |||| |||||||||||||| || | ||||||| |||| |||||| |||||||| Sbjct 13823 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 13764 Query 27276 GAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACA 27335 | ||| || | | ||| || ||| | ||||| | || ||||| |||| ||| ||| Sbjct 13763 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 13704 Query 27336 GATCCATGGACGCATACCTAAAC-GATATGAGAGTTCCCACTCACGTCCCATATAAGCAT 27394 ||||| ||| ||||||| | || || || | |||||||||||||| ||||||||| | Sbjct 13703 AATCCAAGGATGCATACCCAGACAGAAATTA-AGTTCCCACTCACGACCCATATAACAAG 13645 Query 27395 AGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACT 27454 | || | | |||||| | || | || | |||||||||| || || ||||| | Sbjct 13644 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 13585 Query 27455 CATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTG 27514 |||| || ||||| |||||| |||||||| || || | | || | ||| Sbjct 13584 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCA-ATCG-----------AGTTG 13537 Query 27515 GGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCAC 27574 | | || |||||||| || || ||||| ||||| | | |||||| || || || Sbjct 13536 GAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGT 13477 Query 27575 GAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||||||| |||||||| | | | ||||||||||| |||| ||| || Sbjct 13476 GAATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 13430 >seq160 Length=286096 Score = 141 bits (156), Expect = 1e-28 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 26798 GGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGAT 26857 |||||| | || |||||||| || | || ||||| || ||||| ||||| || | Sbjct 255338 GGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGT 255279 Query 26858 TGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGA 26917 |||| |||||||| || || ||||| ||||| || | ||| | || |||||||||| Sbjct 255278 TGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGA 255219 Query 26918 TGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAG 26977 | || || || ||||| ||||| |||||||| || ||||| ||||||||||| || Sbjct 255218 TCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAG 255162 Query 26978 CATATTGGAAGATCAAACGACCGAAGTAGCCATGT-GCTGCGAC 27020 ||||||||||||| || ||||| || || || | | ||||||| Sbjct 255161 CATATTGGAAGATTAATCGACCAAAATAACCGTTTCACTGCGAC 255118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665381191083880