Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1353 123 3e-23 seq4862 114 2e-20 seq1263 113 5e-20 seq6706 111 2e-19 seq3117 111 2e-19 seq2823 105 8e-18 seq214 93.3 5e-14 seq1754 87.8 2e-12 seq4598 84.2 3e-11 >seq1353 Length=118606 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| ||| | ||||| || || || ||||| ||||||||||| || || || Sbjct 95243 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 95302 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||||||||| |||||| || || Sbjct 95303 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 95362 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 95363 GCTCATCTCCCGCGACGAGGGCCTGCAC 95390 >seq4862 Length=32157 Score = 114 bits (126), Expect = 2e-20 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| ||| ||| || || || || || ||| Sbjct 31677 GGAGCCAAGATCCCCAAGGGATGCCTCCTCGTGGGCCCGCCTGGGACAGGTAAAACTCTC 31618 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| ||||| | | Sbjct 31617 CTTGCGCGTGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCTGCCTCCGAG 31558 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | ||| Sbjct 31557 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCATCCAGGGTCAGGGACCTCTTCGAGAAGGCC 31498 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | || || || |||||||||||||||||||| || || || || | ||| || Sbjct 31497 AAGGCCAAGGCGCCGTGCATTGTCTTCATTGATGAGATCGACGCCGTTGGGAGGCAGCGT 31438 Query 175515 -----CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | ||| |||||||| || || || ||||| || || Sbjct 31437 GGTGCCGGCCTTGGTGGT------GGAAACGACGAGAGGGAGCAGACCATTAACCAGCTG 31384 Query 175570 CTCACCGAGATGGATGGCTTTG 175591 || || |||||||| ||||||| Sbjct 31383 CTGACGGAGATGGACGGCTTTG 31362 >seq1263 Length=124836 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| |||||||| || || || || Sbjct 20132 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 20191 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| ||||| || || Sbjct 20192 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 20251 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || |||||||| ||| || |||||| Sbjct 20252 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCC 20291 >seq6706 Length=16376 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| |||| || ||||| ||| | | ||| Sbjct 12180 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCTCGGGTCCGTGATCTGTTTAAGAAGGCC 12239 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| ||||||||||| || | ||| | Sbjct 12240 AAGGAGAATGCCCCTTGCATAGTGTTTGTTGATGAAATTGATGCGGTTGGAAGGCAGAGA 12299 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||| | | |||||| || || || || || | |||||||| | || Sbjct 12300 GGAACTGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACCCTCAATCAACTTTTGACT 12359 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | || || || | ||||| || |||||||| || | Sbjct 12360 GAGATGGATGGTTTTGAGGGAAACACCGGAATAATTGTTATAGCTGCCACTAACCGAGCT 12419 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||||| | ||| || || ||| | || || || ||||| Sbjct 12420 GATATTTTGGATTCTGCTCTACTTAGACCTGGACGCTTTGA 12460 >seq3117 Length=57653 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| |||||||| || || || || Sbjct 28821 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 28880 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| ||||| || || Sbjct 28881 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 28940 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || ||||| || |||||||| ||| || ||||| Sbjct 28941 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 28979 >seq2823 Length=63626 Score = 105 bits (116), Expect = 8e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || ||| |||| || || || || || || || ||| Sbjct 63158 GGAGCCAAGATCCCAAAGGGATGCCTCCTCGTCGGCCCACCTGGGACAGGCAAAACACTC 63217 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| || | || || | || || ||| || ||| | ||| | | Sbjct 63218 CTCGCCCGTGCCGTCTCTGGGGAGGCCGGGGTACCCTTCTTCTCCTGCGCCGCCTCCGAG 63277 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | || Sbjct 63278 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCGTCCAGGGTCAGGGACCTCTTCGAGAAGGCT 63337 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 63338 AAGGCCAAGGCGCCTTGCATTGTCTTCATTGATGAGATTGATGCTGTCGGGAGGCAGCGT 63397 Query 175516 AGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||||| | | | | ||| || ||||| || || || ||||| || || ||||| Sbjct 63398 GGTGCTGG-GCTCGGTGGTGGAAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCAC 63456 Query 175575 CGAGATGGATGGCTTTG 175591 ||| ||||| ||||||| Sbjct 63457 CGAAATGGACGGCTTTG 63473 >seq214 Length=259295 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| ||||| | || || ||||| ||| | | ||| Sbjct 154172 TTTGTGGAGATGTTTGTCGGTGTTGGTGCATCCCGTGTCCGTGATCTGTTTAAGAAGGCC 154231 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || || || || ||||||| |||||||| || || | ||| | Sbjct 154232 AAGGAGAATGCACCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGAGA 154291 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| ||| | |||||| || || || || || | || || || | Sbjct 154292 GGAACTGGTATCGGT---GGTGGAAATGATGAAAGGGAGCAGACCCTGAACCAGCTTTTG 154348 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 |||||||||||||| ||||| | ||||| || | |||||||| ||||| || || Sbjct 154349 ACCGAGATGGATGGTTTTGAAGGGAACACTGGAATAATTGTTATTGCTGCCACCAACCGA 154408 Query 175633 GTGGATAT 175640 | ||||| Sbjct 154409 GCTGATAT 154416 >seq1754 Length=96608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||| ||||| ||||| | || || ||||| ||| | | ||| Sbjct 23233 TTCGTGGAGATGTTTGTCGGTGTTGGTGCATCCCGTGTCCGTGATCTGTTTAAGAAGGCC 23174 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || || || || ||||||| |||||||| || || | ||| | Sbjct 23173 AAGGAGAATGCACCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGAGA 23114 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| ||| | |||||| || || || || || | || || || | Sbjct 23113 GGAACTGGTATCGGT---GGTGGAAATGATGAAAGGGAGCAGACCCTGAACCAGCTTTTG 23057 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 |||||||||||||| ||||| | ||||| || | |||||||| ||||| || || Sbjct 23056 ACCGAGATGGATGGTTTTGAAGGGAACACTGGAATAATTGTTATTGCTGCCACCAACCGA 22997 Query 175633 GTGGATAT 175640 | ||||| Sbjct 22996 GCTGATAT 22989 >seq4598 Length=35162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| |||| || |||||||| |||| || || |||| | || |||| || Sbjct 34846 GGGACTTCGATTATGACTACTTTGGGTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA-- 34789 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | ||| | | | |||| ||||| ||||||| ||| | || || | || || Sbjct 34788 GCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGTTAATGAGAGTTTCAGTGGGGAT 34729 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| |||||||| |||| | | | |||||| | |||||| || | ||| Sbjct 34728 ACACAAGGATGACATTGAATCTGCCATCAAAACATACCATCTGATGTCTCAGCGCTGGTT 34669 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 | || || ||||||| || |||||||||||||| || || || ||| || Sbjct 34668 TACACATGCTTCACCAACGCTTTTCAATGCTGGTACTCCCAGGCCCCAGGTG 34617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596468116053920