Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq7208 224 1e-53 seq691 197 2e-45 seq2365 190 3e-43 seq160 93.3 5e-14 >seq7208 Length=13341 Score = 224 bits (248), Expect = 1e-53 Identities = 419/610 (69%), Gaps = 8/610 (1%) Strand=Plus/Minus Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 |||||| ||||| |||| | | ||| || || || |||| ||||||||| |||| || Sbjct 2314 TTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCATTGAATAG 2255 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| || || || |||||| |||| ||||| || Sbjct 2254 -GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTG 2196 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 || ||| |||||||| ||| ||||| || |||||||| || |||| || ||| |||| Sbjct 2195 CTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATT 2136 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || |||||| || || | |||||| | || |||||| | || || Sbjct 2135 AGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCTGCAACAGG 2076 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGA--TAACT-CCCA 8531 || ||| | ||| ||||| || | | |||| || | || | ||| | |||| Sbjct 2075 AGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAAC---ATCAACTAAGTTCCCA 2019 Query 8532 CTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGG 8591 | | |||||| ||| || | |||| | |||||| | | || | || | | || Sbjct 2018 TTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAGG 1959 Query 8592 ACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAA 8651 ||| || || || ||||| ||||| | || ||||| |||| || || || || || Sbjct 1958 ACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAA 1899 Query 8652 TCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTG-TTTCCATACATGA 8710 || || || ||| | |||| | ||||||||||| || ||| |||| ||| || | Sbjct 1898 TCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATAAATTA 1839 Query 8711 ATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATG 8770 | ||||| |||||| ||| ||||||| || ||||| || || ||||| || || || | Sbjct 1838 AAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGG 1779 Query 8771 CCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAAC 8830 | | ||||| || | |||| || ||| ||| ||||| | ||| |||||||| | Sbjct 1778 CGATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATC 1719 Query 8831 CGACATAAAG 8840 || ||||| Sbjct 1718 GGATGTAAAG 1709 >seq691 Length=167025 Score = 197 bits (218), Expect = 2e-45 Identities = 327/471 (69%), Gaps = 1/471 (0%) Strand=Plus/Plus Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || ||||||||||| ||||| |||||| | | |||||| Sbjct 130714 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 130773 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| || ||| ||||||||||| || || Sbjct 130774 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCTTG 130833 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | | || | ||||| || || |||||| | || ||||| |||||| || Sbjct 130834 ACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 130893 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || |||||| | | | | | ||||||| | |||||| ||| Sbjct 130894 AGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACA 130953 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | | | ||| ||| || | | || | || ||| ||||| || || || ||||| Sbjct 130954 AGCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCA 131012 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | |||||||||||||| || || || || ||||| || || ||| Sbjct 131013 TTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAAGT 131072 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 ||||| | |||||||||| || ||||||||||| | || ||||| || ||| | Sbjct 131073 TGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTT 131132 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||| || ||||| | || | || ||||| || || | ||||| Sbjct 131133 GCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 131183 >seq2365 Length=77851 Score = 190 bits (210), Expect = 3e-43 Identities = 302/434 (70%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 8314 GCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAAC 8373 ||||| ||| ||| || || ||||||||||| ||||| |||||| | | |||||| | | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 || ||||| || |||||||| || |||| |||||| ||||||||||| || |||||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493 | || || | ||||| || || |||||| || || ||||| || ||| ||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || |||||| | | | | | ||||||| | |||||| ||| || Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | |||||| | | || | || ||| ||||| || || || ||||| ||| Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 || | | ||||||||| ||| || || | ||| |||| | ||||||| | Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAA-----AATGCAATCGAGTTGGAAAA---- 13532 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | ||||||||||| || ||||||||||| | || ||||| || ||| || || Sbjct 13531 ---ATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTGA 13475 Query 8734 ATACCGTCGATATC 8747 ||||| || ||||| Sbjct 13474 ATACCATCAATATC 13461 >seq160 Length=286096 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/169 (74%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || || || || || ||||| |||||||| || | |||||| Sbjct 255295 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 255236 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||||| | | ||| || || | | ||| | |||| || |||| | Sbjct 255235 TAAAGCAGTGAACCAGATCCCTACTACAGGCCAGGCAGCCAAGAAGT-GTAAAGAA--CG 255179 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCC 8165 | |||||| |||| | ||||| ||||||||||||| |||||| || || Sbjct 255178 AGAGTTGTTGAAACTA-GCATATTGGAAGATTAATCGACCAAAATAACC 255131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615757634107480