Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq7208 233 2e-56 seq691 233 2e-56 seq2365 214 2e-50 seq160 140 4e-28 >seq7208 Length=13341 Score = 233 bits (258), Expect = 2e-56 Identities = 456/664 (69%), Gaps = 11/664 (2%) Strand=Plus/Plus Query 165758 CCTG-GGAATC-CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTG 165815 |||| || ||| ||||||| | | | | || || || || || |||| || || | || Sbjct 1664 CCTGTGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATG 1722 Query 165816 GTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCT 165874 ||||||| ||||||| || || | ||| | ||||| |||| || || |||||| Sbjct 1723 GTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCT 1781 Query 165875 TCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGA 165934 ||||||| ||||| || || || || || || || | ||| || || ||||||| | | Sbjct 1782 TCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAA 1841 Query 165935 TGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTA 165993 | ||| | || ||| || ||||||||||| || |||| | ||| || || | | Sbjct 1842 TTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 1901 Query 165994 CACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCT 166053 || || || || | || ||||| |||| |||| |||||| | || || ||||||||| Sbjct 1902 CATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCT 1961 Query 166054 TTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGG 166113 | | || |||| | |||||| | |||| | | || ||||||||||| ||| Sbjct 1962 TGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGG 2021 Query 166114 GAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTC 166173 ||||| || || | |||| |||||| ||||| |||| | || ||| | || || Sbjct 2022 GAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTT 2081 Query 166174 GCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCA 166233 || ||||| | || | ||| || | || ||| |||||||| ||||| ||| ||| Sbjct 2082 GCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGT 2141 Query 166234 ATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAAT 166293 ||| | | |||||||| || || ||||||| ||| || ||||| || ||||||| Sbjct 2142 ATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAAC 2201 Query 166294 ATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTT--TGT 166351 || || | |||||| || || || | || || ||||| ||||| ||| ||| | | Sbjct 2202 ATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATT---CGGCGGTTCCTAT 2258 Query 166352 TTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCG 166411 | | ||||||||| | ||||| || ||| | | | || ||||| |||||||| | Sbjct 2259 TCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTG 2318 Query 166412 AATC 166415 |||| Sbjct 2319 AATC 2322 >seq691 Length=167025 Score = 233 bits (258), Expect = 2e-56 Identities = 355/500 (71%), Gaps = 4/500 (1%) Strand=Plus/Minus Query 165844 TTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGAC 165903 ||| | |||||| || || || |||||||||| || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 165904 GGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCA 165963 || || || | || | ||||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 165964 GTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCG 166023 || |||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 166024 CTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATT 166083 ||||| |||||| | || || |||||||||| | || |||| | || ||| | || Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 166084 G-GCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCC 166142 | | | || || || |||||||||||||||||||| || | |||| ||||||| ||| Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 166143 ATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATA 166202 ||||| |||||| || ||||| || || || ||||| | ||| || ||| | | || Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 130844 Query 166203 TCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAA 166262 || |||||||||| ||||||||||||| ||| | | |||||||| || || ||||| Sbjct 130843 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 130784 Query 166263 CTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGG 166322 || ||| | || ||| | | |||||||| || || |||||||| || || ||| | || Sbjct 130783 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 130724 Query 166323 CGTTGCTGGGGTATTTGGTG 166342 || ||||| ||| ||||| Sbjct 130723 TGTAGCTGGTGTAGCTGGTG 130704 >seq2365 Length=77851 Score = 214 bits (236), Expect = 2e-50 Identities = 324/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 165869 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 165928 ||||||||||||| ||| || | || || || || || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 165929 CTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTG 165988 || | | ||||| ||||| || ||||||||||| || |||| ||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 13547 Query 165989 GTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTG 166048 || || || || || |||||| ||||| ||||| |||||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 166049 GTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTG 166108 |||||| | || |||| | |||||| | |||| | | || |||||||||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 166109 AGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCAC 166168 |||||||||| || | |||| ||||||| ||| ||||| |||||| | ||||| | Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 166169 CAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTG 166228 | || | ||||| | ||| || ||| | | || ||| | |||||||| |||||||||| Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 166229 ATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGC 166288 ||| ||||| | |||||||| || || ||||||| ||| | || ||| | | |||| Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 166289 ACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 |||| || || |||||||| || || ||| | || || ||| Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 140 bits (154), Expect = 4e-28 Identities = 152/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 ||||| || ||||| || ||||||||||| ||| ||||||||||| || || || ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 ||||| ||||| |||||||| || || ||||||||||| || | || | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 |||||||||||||| || |||||||| |||||||| || | ||||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 166657 GTGTTGAACACCTGGGCAGAT 166677 || | || || ||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561152524699600