Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq691 210 6e-50 seq2365 190 6e-44 seq7208 174 5e-39 seq160 122 3e-23 >seq691 Length=167025 Score = 210 bits (232), Expect = 6e-50 Identities = 336/481 (70%), Gaps = 1/481 (0%) Strand=Plus/Minus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 |||||||||||||| ||| || | || | || || ||||| || || | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 ||| || | | ||||| ||||| || || || || | | | |||| | || Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || |||||| | || || |||||||||||||||||||| | |||||||||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || || ||||| | | || | || | || ||| | ||| ||| ||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTG-TTATATG 130945 Query 41567 GGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTAC 41626 || || ||||||||||||| | | || || ||| || ||||| |||||| || Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 41627 TCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCT 41686 || |||||||| || ||||| |||||||| ||| | |||| | | || || || | Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 || ||||||| |||| | || || || || || || ||||||| ||| | || ||| || Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 | |||||||| || ||||||||||| ||||||||| | ||||| || || ||| |||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 130705 Query 41807 G 41807 | Sbjct 130704 G 130704 >seq2365 Length=77851 Score = 190 bits (210), Expect = 6e-44 Identities = 243/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 || || ||||||||| ||||||||| | |||||||||||| | ||||| || ||||| Sbjct 13548 CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCT 13607 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | | || | || | |||||| | |||| || | ||| ||||| || |||||| Sbjct 13608 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 13667 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 ||||||| | | || || ||| || ||||| |||||| | || |||||||| Sbjct 13668 GAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTT 13727 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698 | ||||| |||||||| ||| | |||| || |||| || || ||| ||||||| | Sbjct 13728 TCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGT 13787 Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAAT 41758 ||||| || || || || || || ||||||| ||| | || ||| ||| |||||||| Sbjct 13788 ATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAAC 13847 Query 41759 ATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 || ||||||||||| ||||||||| | ||||| || Sbjct 13848 ATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 174 bits (192), Expect = 5e-39 Identities = 394/587 (67%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 41265 GTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC-GCTACAACT 41323 ||||||| | ||||||| || || | ||||| || | ||| ||| | || || || Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACCTCT 1765 Query 41324 TGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCC 41383 |||||||||||||| | | || || || || || || ||||| || | || || Sbjct 1766 GTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCT 1825 Query 41384 GTCGCTGGCTCCCTGTTGTATGGTAA-CAACATCATATCAGGAGCCGTCGTTCCGAGCAG 41442 || ||| || | | ||| | || ||| || || || || ||| | |||| Sbjct 1826 GTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTC 1885 Query 41443 TAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCT 41502 | || ||| || | || || |||||| |||| ||||| || ||||||||||| | Sbjct 1886 TGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTT 1945 Query 41503 GTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTA 41562 ||||| || ||||| | | || | || | |||||| | |||| || | ||| Sbjct 1946 ATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 2005 Query 41563 CATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGC 41622 ||||| || || ||||||||||| | | | || | | | || ||||| ||||| | Sbjct 2006 TATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTC 2065 Query 41623 GTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGG 41682 || || ||||||| || ||||| || ||| | ||| | | || || ||| || || Sbjct 2066 CTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGG 2125 Query 41683 CTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTT 41742 ||||||| ||| |||| | || || || || || || ||||||| ||| || || Sbjct 2126 AAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATT 2185 Query 41743 CCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATT 41802 |||||| ||||||| || |||| |||||| |||||||| | ||||| || || ||||| Sbjct 2186 CCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATT 2245 Query 41803 TGGTGGGAGTT--TGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 || | ||| | ||| ||||||||| || | |||| || || Sbjct 2246 CGGCG---GTTCCTATTCAATGCTATGCATAGTTCCTTGGTAACCTC 2289 >seq160 Length=286096 Score = 122 bits (134), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 41940 ACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTC 41999 |||| ||||||||||| | ||||||||||||||||| || || || || ||| | | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 42000 ATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA 42059 | ||||| |||||||||||||| ||||| || ||||| |||| | || | || Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 42060 CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100 | ||||| |||||| | ||||||||||| || ||||||||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCT 255286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146190770747736