Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq691 219 1e-52 seq7208 203 9e-48 seq2365 188 2e-43 seq160 129 2e-25 >seq691 Length=167025 Score = 219 bits (242), Expect = 1e-52 Identities = 339/482 (70%), Gaps = 3/482 (1%) Strand=Plus/Minus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| |||| |||||||| |||| ||| |||| |||||||| ||||| | ||| | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 | ||| ||| | || ||||| ||||| || |||||||||| | | | || | || Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || ||| | ||||| || | || |||||||| | ||||| |||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG-GTATCTTCTCTTACTT 42620 ||||| || |||||| |||| | || | || ||| | | | ||| ||| | || | Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA--T 130946 Query 42621 GGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTA 42680 ||| || || ||||||||| | | | || || ||| || ||||| |||||| || Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 42681 CTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTC 42740 || || ||||| || || || ||||| || ||| | | || | | || ||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 ||| || ||||| ||| || | || || || ||||| |||||||| ||| | || ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 || || || ||||| ||||||||||| || || ||| | ||||| || || ||| ||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGG 130706 Query 42861 TG 42862 || Sbjct 130705 TG 130704 >seq7208 Length=13341 Score = 203 bits (224), Expect = 9e-48 Identities = 420/614 (68%), Gaps = 11/614 (2%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 ||| ||| || || |||| | | ||| || || || ||||||| | | |||||| Sbjct 1668 TGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTT 1726 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| ||| | ||| |||||| |||| |||| Sbjct 1727 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACCTC-TGTATTTATTATCGCCTTCA 1784 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | || || ||||| ||||| |||||||| |||| ||| ||||| | ||| ||| | | | Sbjct 1785 TCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTT 1844 Query 42458 ATGGCAA-CAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACAT 42516 || | || ||| || |||||||||||| | | ||| | || || || | ||| Sbjct 1845 ATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCAT 1904 Query 42517 TTGTATTCGATCTGGGAAGC--CAATACCCTTGACGAATGGCTCTACAATGGCGGACCTT 42574 || || | | || ||||| || | |||| |||||| | |||||||| || |||| Sbjct 1905 TTTTACCCACTTTGAGAAGCGGCATTTG--TTGATGAATGGTTATACAATGGTGGTCCTT 1962 Query 42575 ATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGG 42634 | |||| | || | |||||| | | ||| | | ||| |||| || ||||||| Sbjct 1963 GTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGG 2022 Query 42635 AACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGG 42694 ||||| | | | || | | | || ||||| ||||| | || || | ||||| | Sbjct 2023 AACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTG 2082 Query 42695 CTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAA 42754 | || || || || | ||| | |||| || ||| ||||| |||||| |||| | Sbjct 2083 CAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTA 2142 Query 42755 TGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACA 42814 || || | || || || ||||| |||||||| ||| || |||||||| | || |||| Sbjct 2143 TGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACA 2202 Query 42815 TTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCT 42874 | |||| |||||| || || || | ||||| || || ||||| || || || | ||| Sbjct 2203 TCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCA 2261 Query 42875 CAGCTATGCATGGT 42888 ||||||||| || Sbjct 2262 ATGCTATGCATAGT 2275 >seq2365 Length=77851 Score = 188 bits (208), Expect = 2e-43 Identities = 322/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| |||| ||||| || || ||| |||| |||||||| |||| || ||| | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 | ||| ||| | || ||||| ||||| || |||||||||||| | | || ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 | |||| ||||| || | || |||||| | ||||| |||||| | ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTG 42621 ||||| || |||||| |||| | || | |||||| | | ||| | | ||| || Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTAC 42681 || || || ||||||||| | | | || || ||| || ||||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 42682 TCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCT 42741 || || ||||| | || || ||||| || ||| | | || || |||| ||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 || || ||||| |||||| | || || || ||||| |||||||| ||| | || ||| || Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | || || ||||| ||||||||||| || || ||| | ||||| || Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 129 bits (142), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || || ||| ||||| || Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACA 255189 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 |||||| |||| ||||| || || ||||| ||||||||| || | || | ||||| Sbjct 255190 CTTCTTGGCTGCC---TGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTAC 255246 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 |||||| || ||| | |||||||| || || |||||||| | ||||||| || || Sbjct 255247 TATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG 255306 Query 43176 TGTCATCCCTACTTGGGCTGATAT 43199 || || ||||||||||||||| Sbjct 255307 CGTTATTAATACTTGGGCTGATAT 255330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143509604112732