Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq691 214 5e-51 seq7208 201 3e-47 seq2365 199 1e-46 seq160 107 6e-19 >seq691 Length=167025 Score = 214 bits (236), Expect = 5e-51 Identities = 332/473 (70%), Gaps = 1/473 (0%) Strand=Plus/Plus Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| ||||| ||| || ||||| ||||| || || || || ||| | | |||| Sbjct 130712 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAAT 130771 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||||||||| |||||||||||||| || | || ||| |||||| ||||| ||| Sbjct 130772 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCT 130831 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || |||| || |||| ||||| || || ||| || | | || |||| ||||||| Sbjct 130832 TGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 130891 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || ||| || || | | || |||||||||| | || ||| Sbjct 130892 ACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAA 130951 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| | | |||||| || | | ||| || | ||| || || |||||||||| | Sbjct 130952 CAAGCTAC-ACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAAC 131010 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || || || || | |||||||||| || ||||||||||| | |||||| || | | Sbjct 131011 CATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAA 131070 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | | || || || ||||||||||| || | ||| || || ||| ||| Sbjct 131071 GTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGC 131130 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 | || || ||||| ||||||| || | ||||| |||||||| | ||||| Sbjct 131131 TTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 131183 >seq7208 Length=13341 Score = 201 bits (222), Expect = 3e-47 Identities = 383/556 (69%), Gaps = 6/556 (1%) Strand=Plus/Minus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| ||| || | || ||||| || ||||| ||||| || || ||||| Sbjct 2271 TGCATAGCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2213 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||| | || || || || | ||| |||||||| ||||||||| |||||||||||||| Sbjct 2212 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATT 2153 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 || | || ||| |||| | |||||| ||||| || ||| || | |||||| | || Sbjct 2152 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCT 2093 Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503 ||| || | | || | || ||| | ||||| ||||| || | | | || | | Sbjct 2092 GTAGCAGCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACAT 2033 Query 26504 TAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATA 26563 || |||||||| | | || ||| ||||| || | ||||||||| | | | Sbjct 2032 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 1973 Query 26564 ATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA-GTGTGCCAGCTTCCCAGAT 26622 || || | | | || || |||||||||| ||| || || | |||| ||||| || | Sbjct 1972 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCC-GCTTCTCAAAG 1914 Query 26623 CGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATT 26682 ||||||||||| | || ||| || ||| | || | | || || || || ||||| Sbjct 1913 TGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATT 1854 Query 26683 G-TTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCG 26741 | |||| || ||||| || || |||| |||||| | || ||||| |||||||| || | Sbjct 1853 GTTTTCTATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAG 1794 Query 26742 GTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATA 26800 | |||||||||||||| | ||||| ||| | || || | | |||| || ||||| Sbjct 1793 GAGCTGCGATGAAGGCGATAATAAATACA-GAGGTTGCAGTCAATAAGGTAGGGATCATC 1735 Query 26801 AGCACCCCGAACCATC 26816 | || || ||||||| Sbjct 1734 AAAACACCAAACCATC 1719 >seq2365 Length=77851 Score = 199 bits (220), Expect = 1e-46 Identities = 325/468 (69%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 26299 AGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAA 26358 ||| ||||| ||| || ||||| ||||| || || || || ||| | | |||||| | Sbjct 13883 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 13824 Query 26359 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||||||||| |||||||||||||| || | |||||| |||||| ||||| ||||| || Sbjct 13823 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 13764 Query 26419 GAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAA 26478 | ||| |||| ||||| || || ||| || || | || |||| || ||||||| Sbjct 13763 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 13704 Query 26479 TATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGC 26538 ||||| || ||| || || | | || |||||||||| | || ||| || Sbjct 13703 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 13644 Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | ||||||||| | | ||| || | ||| || || |||||||||| ||| || Sbjct 13643 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 13584 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 || || | |||||||| || ||||||||||| | || | ||| || Sbjct 13583 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GG 13536 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 | | || || || || ||||||||||| || | ||| || || ||| ||||| | Sbjct 13535 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTG 13476 Query 26719 TATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 || ||||| ||||||| | | |||||||||||||| | ||||| Sbjct 13475 AATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 13430 >seq160 Length=286096 Score = 107 bits (118), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || |||||||||||||| |||||||| || | ||||| Sbjct 255295 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 255236 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || ||||| | ||| ||||| || | |||||| Sbjct 255235 TAAAGCAGTGAACCAGATCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACG 255179 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGT 26153 ||| || ||||| ||||| || || ||||||| ||||| || |||| Sbjct 255178 AGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGT 255129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147688128725280