Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq691 277 2e-69 seq2365 257 2e-63 seq7208 253 2e-62 seq160 105 8e-18 >seq691 Length=167025 Score = 277 bits (306), Expect = 2e-69 Identities = 348/474 (73%), Gaps = 3/474 (1%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| ||||||||||||| || | ||| |||| |||||||||||||| | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||||||||| | ||||| ||||| || |||||||||| || | || | || Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || || | || || || || ||||||||||| ||| |||||||||| ||||| ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCG-GAATCACAGCATACTG 155300 ||||||||||||| | || | || | || ||| | | | | | | ||| || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA-TG 130945 Query 155301 TGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 155360 |||||| ||||||||||| || | |||| || |||| ||||||||| ||||||||| Sbjct 130944 -GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 155361 CTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 155420 || || || || | ||||| ||||| ||| | |||| || |||||||||| Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 130826 Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCA 155480 ||||||||||| ||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 130825 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 130766 Query 155481 AGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGT 155534 | ||| ||||| ||||||||||| || || |||||| | || ||||| ||||| Sbjct 130765 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 257 bits (284), Expect = 2e-63 Identities = 340/470 (72%), Gaps = 20/470 (4%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||| || || ||| |||| ||||||||||||| || || | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||||||||| | ||||| ||||| || ||||||||||| || | || ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 | |||| || || || || ||| |||||| ||| |||||||||| ||||| ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 ||||||||||||| | || | || | |||||| | | || | ||| | | | Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTAT 13652 Query 155302 ---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCA 155358 |||||| ||||||||||| || | |||| || |||| ||||||||| ||||||| Sbjct 13653 ATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCA 13712 Query 155359 TACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGT 155418 | || || || || || ||||| ||||| ||| | |||| ||| | |||||||| Sbjct 13713 AATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGA 13772 Query 155419 TCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTC 155478 ||||||||||| |||||| | || |||||||||||||| |||| |||| | || ||| Sbjct 13773 AGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 13832 Query 155479 CAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGC 155528 | | ||| ||||| ||||||||||| || || |||||| | || ||||| Sbjct 13833 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 253 bits (280), Expect = 2e-62 Identities = 403/574 (70%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCC 155073 ||||| |||||| | ||||||||| | | | |||| | | || ||| ||||| Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTGTATTTATTATCGCC 1780 Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133 ||||| || || ||||| ||||| ||||||||||||| ||| || || |||||||||| Sbjct 1781 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTA 1840 Query 155134 ATGTAT-GGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCT 155192 || ||| | ||||| || ||||||||||| || | ||| ||| || || | | Sbjct 1841 ATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 1900 Query 155193 CCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCC 155252 || || || || |||| ||||| ||| | ||||||| ||||| |||||||||||||| Sbjct 1901 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 1960 Query 155253 TTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCA 155309 || | || | || | |||||| | | || | ||| | | | |||||| | Sbjct 1961 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGA 2017 Query 155310 GTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 155369 ||||||||| || || | || | |||||||||||| |||| | || || | || Sbjct 2018 ATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCC 2077 Query 155370 AGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGA 155429 || | ||||| ||| | ||| | | || ||| |||||||| ||| ||| | Sbjct 2078 TGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2137 Query 155430 TGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACA 155489 || ||| || | || |||||||||||||| |||| |||| || ||||| ||| | || Sbjct 2138 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCA 2197 Query 155490 CAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCT 155549 ||| ||||||| ||| || || ||||| | || ||||| ||||| ||||| || || || Sbjct 2198 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CT 2256 Query 155550 TTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 ||| ||||||||| |||| ||||| || ||| Sbjct 2257 ATTCAATGCTATGCATAGTTCCTTGGTAACCTCT 2290 >seq160 Length=286096 Score = 105 bits (116), Expect = 8e-18 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 155677 GGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCAC 155736 || || || ||||| | |||||||| ||||| ||||||||||| | | | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 155737 TTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACG 155796 ||||| ||||| |||||||| || | |||||| |||||| | ||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 155797 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA 155843 |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 255294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584735712222040