Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq7208 233 5e-57 seq691 228 2e-55 seq2365 215 1e-51 seq160 98.7 3e-16 >seq7208 Length=13341 Score = 233 bits (258), Expect = 5e-57 Identities = 451/653 (69%), Gaps = 13/653 (2%) Strand=Plus/Minus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATA 40925 ||||||||||| |||||||||| | | | |||| || ||||| | |||||| Sbjct 2322 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGT--TACCAAGGAA-CTATGCATA 2266 Query 40926 GCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATG 40985 ||| || | | ||| || || || || || || || | || || ||||| ||| | Sbjct 2265 GCATTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTA 2207 Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 || |||||||| | ||| ||||| ||| ||| |||||||| || ||| |||||||||| Sbjct 2206 AGGATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAA 2147 Query 41046 GGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCT 41105 | |||||||| ||| ||| || ||||| || || | |||||| | |||| ||| Sbjct 2146 GCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCA 2087 Query 41106 GCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAA 41165 |||| | |||| || || | |||| ||||| || | | |||| | | | | Sbjct 2086 GCTGCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTA 2027 Query 41166 AGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGT 41225 |||||||| | | ||| || ||||| || | ||| ||||| | ||||| || Sbjct 2026 AGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1967 Query 41226 TGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTA 41284 | | | || || || ||||||| ||| || || | |||| ||||| || | |||||| Sbjct 1966 TCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCC-GCTTCTCAAAGTGGGTA 1908 Query 41285 GAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTG-TTCC 41343 ||||| | || ||| || ||| |||| | || ||||| ||||||||| || | Sbjct 1907 AAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTC 1848 Query 41344 CGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 41403 || ||||| || || |||| |||||| | || ||||| |||||||| || || |||| Sbjct 1847 TATAAATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTG 1788 Query 41404 CGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACA 41462 |||| |||||||| || || ||| | ||| ||||| | ||| | || ||||| | ||| Sbjct 1787 CGATGAAGGCGATAATAAATACA-GAGGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 1729 Query 41463 CCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||||| | | ||| || | || | ||| ||||| | | |||| || || Sbjct 1728 CCAAACCATCGGATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGAA 1677 >seq691 Length=167025 Score = 228 bits (252), Expect = 2e-55 Identities = 340/481 (71%), Gaps = 1/481 (0%) Strand=Plus/Plus Query 40942 CACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTG 41001 ||||| || || || || || | ||| || ||||| ||||| || |||||||| ||| Sbjct 130704 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 130763 Query 41002 CTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGA 41061 | | ||| |||| ||| |||||||| || ||| ||||||||||| |||||||||||||| Sbjct 130764 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 130823 Query 41062 AAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTG 41121 || || ||||||| | |||| ||||| ||||| ||| |||| | ||||||| Sbjct 130824 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 130883 Query 41122 TGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTAC 41181 ||||| ||| ||||| || |||||| || | | | ||||||||||| | || Sbjct 130884 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 130943 Query 41182 CAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGT 41241 | || ||||| | | ||| || || | ||||| || | ||| || || || | Sbjct 130944 CCATATAACAAGCTAC-ACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCAT 131002 Query 41242 TGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 |||||| ||| || || || | | |||||||| |||||||| ||||| | |||||| | Sbjct 131003 TGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCG 131062 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGG 41361 | | | | |||| | | ||||| ||||||||||| || || | ||| || || Sbjct 131063 CCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAA 131122 Query 41362 AAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGA 41421 ||| |||| || || ||||| ||||||| || | ||||| || |||||||| || | Sbjct 131123 AAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAA 131182 Query 41422 A 41422 | Sbjct 131183 A 131183 >seq2365 Length=77851 Score = 215 bits (238), Expect = 1e-51 Identities = 328/467 (70%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAAC 41015 || || || | ||| || ||||| ||||| || |||||||| ||| | | ||| |||| | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCG 41075 || |||||||| || ||| |||||||||||||||||||||||||||| || ||||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 41076 AATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAAT 41135 | || |||| ||||| ||||| ||| ||||| | ||||||| | ||| ||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCT 41195 ||||| || |||||| || | | | ||||||||||| | ||| || ||| Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| ||||| | ||||| || | ||| || || || ||||||| ||| || Sbjct 13642 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 13583 Query 41256 TCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 || || | | |||||| |||||||| ||||| | || ||| | ||| Sbjct 13582 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCAATC-----------GAG-TTGGA 13535 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || ||||| ||||||||||| || || | ||| || || ||| ||||| | Sbjct 13534 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTGA 13475 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 || ||||| ||||||| | | |||||||| |||||||| || || Sbjct 13474 ATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 13430 >seq160 Length=286096 Score = 98.7 bits (108), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 40607 ATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAA 40665 ||||||||||||| ||| || ||| || || || ||||| || ||||| || || | Sbjct 255328 ATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGATTGGTTGAAATTGA 255270 Query 40666 AACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAA 40725 ||||||| ||||| || ||||||||| ||||| | | || | ||| || || | | Sbjct 255269 AACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTACTA 255210 Query 40726 CCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAA 40785 | || | ||| | |||||||||| | ||| |||||||| ||||||||| | Sbjct 255209 CAGGCCAGGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 255153 Query 40786 ATATTAGTCTACCAAAGTAACCGT 40809 | |||| || |||||| ||||||| Sbjct 255152 AGATTAATCGACCAAAATAACCGT 255129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143679176704206