Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq691 241 1e-58 seq7208 228 9e-55 seq2365 210 2e-49 seq160 122 1e-22 >seq691 Length=167025 Score = 241 bits (266), Expect = 1e-58 Identities = 348/486 (72%), Gaps = 5/486 (1%) Strand=Plus/Plus Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 |||||| ||||| || | ||| || ||||| ||||||||||||||||||||| | | ||| Sbjct 130711 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 130770 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | ||| |||| ||||||||||| || || | || ||| | ||||||||| || Sbjct 130771 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 130830 Query 67898 TTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 |||||||| || || | |||||| ||||| || || | || ||||| || ||||| Sbjct 130831 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 130890 Query 67958 TACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTA 68017 ||| ||||||||| ||||||| |||| | || ||||||||||| |||||| || || Sbjct 130891 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACC-CA-TA 130948 Query 68018 TGCTGTGATTC-CGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACA 68076 | | | | | | | ||| || | || | || | |||| |||||||| || | Sbjct 130949 TAACAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 131008 Query 68077 ACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTG 68136 |||| ||||| |||| ||| |||||||| || || || || || | ||||| || Sbjct 131009 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 131068 Query 68137 AACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAG 68196 || | |||| || ||||||| || || ||||| || || | | ||||| || || Sbjct 131069 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 131128 Query 68197 GTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA--AGCA 68254 | | | |||||||| ||||| | |||| | ||||||||||| || || || | || | Sbjct 131129 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAATAGGA 131188 Query 68255 AGTTGC 68260 |||||| Sbjct 131189 AGTTGC 131194 >seq7208 Length=13341 Score = 228 bits (252), Expect = 9e-55 Identities = 411/597 (69%), Gaps = 8/597 (1%) Strand=Plus/Minus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 ||||| || || |||| | | ||| || || | |||| ||||||||| | || || Sbjct 2313 TCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCATTGAATAG- 2255 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | || || ||||| ||| |||||||||||||| Sbjct 2254 GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGC 2195 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCA 67886 | ||| ||||| || ||| |||| ||||||||||| || || | || ||| | | | Sbjct 2194 TGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTA 2135 Query 67887 GAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGA 67946 || ||| |||||||| ||| |||| ||||| | ||| || || | || ||| Sbjct 2134 GAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCTGCAACAGGA 2075 Query 67947 GCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGA 68006 | || || | ||| |||||||||||| |||| | || || ||||||||| | | Sbjct 2074 GTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAAGTTCCCATTCA 2015 Query 68007 CGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063 ||||| | | | ||| | || | | |||||| | || | || | |||| Sbjct 2014 CGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAGGA 1958 Query 68064 CCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGA 68123 |||||||| || ||||| ||||| | | ||| ||||| || | || || || || | Sbjct 1957 CCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAAT 1898 Query 68124 CCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTG-TTACCGTACATGAG 68182 | ||| || ||| ||||| || |||||||| || || ||| || | || || | Sbjct 1897 CTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATAAATTAA 1838 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 ||||| |||||| || |||||||| ||||| |||||||| ||||| ||||| || Sbjct 1837 AGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGGC 1778 Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || || | ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 1777 GATAATAAATACAGAGGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1721 >seq2365 Length=77851 Score = 210 bits (232), Expect = 2e-49 Identities = 336/480 (70%), Gaps = 22/480 (5%) Strand=Plus/Minus Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 ||||| || | ||| || ||||| ||||||||||||||||||||| | | ||| || | | Sbjct 13882 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 13823 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 || |||| ||||||||||| || || | |||||| | ||||||||| |||||||| Sbjct 13822 ATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 13763 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | ||| || | |||||| ||||| || || || || ||||| || | ||| ||| Sbjct 13762 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 13703 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCT 68021 ||||||||| ||||||| |||| | || ||||||||||| |||||| | | | ||| Sbjct 13702 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 13643 Query 68022 GTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCAC 68081 | || | | |||||| | || | || | |||| |||||||| || ||||| Sbjct 13642 ---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 13586 Query 68082 TCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTA 68141 ||||| |||| ||| |||||| || || || || || | || | ||| Sbjct 13585 TCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT------- 13538 Query 68142 GGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCT 68201 |||| || |||||||| || || ||||| || || | | ||||| || ||| || Sbjct 13537 GGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCG 13478 Query 68202 CTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA--AGCAAGTTG 68259 |||||||| ||||| | |||| ||||| ||||| || || || | || |||||| Sbjct 13477 TGAATACCATCAATATCTATTGGA--AGCTGCGATGAAGGCGATAATAAATAGGAAGTTG 13420 >seq160 Length=286096 Score = 122 bits (134), Expect = 1e-22 Identities = 156/213 (73%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTG 67483 ||| | ||| || ||||||||| ||| || | |||| | ||||| || ||||| Sbjct 255337 GTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAACTACAGATTG 255281 Query 67484 GTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCA 67543 |||||| |||||||| || ||||||||||||||||| | ||| | ||||||||||| Sbjct 255280 GTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCA 255221 Query 67544 GATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGA 67603 ||| | || ||||| | ||||| |||||||| | | | |||||||||||| Sbjct 255220 GATCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACT 255164 Query 67604 TGCATACTGGAAGATCAAGCGACCGAAGTATCC 67636 ||||| |||||||| || ||||| || || || Sbjct 255163 AGCATATTGGAAGATTAATCGACCAAAATAACC 255131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566850755194440