Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq7208 298 6e-76 seq691 268 1e-66 seq2365 241 1e-58 seq160 147 2e-30 >seq7208 Length=13341 Score = 298 bits (330), Expect = 6e-76 Identities = 441/617 (71%), Gaps = 6/617 (1%) Strand=Plus/Minus Query 68179 GACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCA 68238 || |||||||||||||| || | | || ||| || |||| ||||| |||||| ||| Sbjct 2322 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2263 Query 68239 CTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGG 68298 |||| || || || || ||||| ||||| || || | || || || || ||| | ||| Sbjct 2262 TTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2204 Query 68299 ATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGC 68358 |||||||||| ||| ||||| || ||| |||||||||||||||| || || | || | Sbjct 2203 ATGTTGTGCTGTGCCTGGAATACAGCCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2144 Query 68359 ATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCT 68418 || | | ||| || |||||||| ||| |||| | ||| | || | || ||| Sbjct 2143 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATTAAGAAAATAGCTGTAGCAGCT 2084 Query 68419 GCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGT 68478 |||||||| | || || | |||| |||||||||||| |||| | || | |||| Sbjct 2083 GCAACAGGAGTTGAATAGGAAACAACAATCCAAGGACGCGTACCCAAACATCAACTAAGT 2024 Query 68479 TCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGG 68538 ||||||||||| ||||| || | | ||||| | |||||| | | | || | Sbjct 2023 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 1964 Query 68539 AAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAG 68598 |||||||||||||||| ||||| ||||||| ||| ||||| |||| || ||||| Sbjct 1963 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 1904 Query 68599 TGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTG-TTACCATA 68657 || | | || || ||| ||||| || |||||||| || || ||| || | ||| Sbjct 1903 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTTCTATA 1844 Query 68658 CAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGAT 68717 | | |||||| |||||| ||| |||||||||| || || || || ||||| ||||| Sbjct 1843 AATTAAAGAACCAAAAACAGGCTCATGAATACCATCAATATCTACTGGAGGAGCTGCGAT 1784 Query 68718 GAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCG 68775 |||||||| || || ||||| |||||| | ||| || ||||||||||||| || || Sbjct 1783 GAAGGCGATAATAAATACAGA-GGTTGCAGTCAATAAG-GTAGGGATCATCAAAACACCA 1726 Query 68776 AACCAACCAACGTAAAG 68792 ||||| | | |||||| Sbjct 1725 AACCATCGGATGTAAAG 1709 >seq691 Length=167025 Score = 268 bits (296), Expect = 1e-66 Identities = 348/479 (73%), Gaps = 3/479 (1%) Strand=Plus/Plus Query 68248 GATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGC 68307 ||| ||||| ||| ||||| || || | ||| || || || ||||| |||||||||||| Sbjct 130700 GATGCACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGC 130759 Query 68308 TCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCA 68367 ||| | | ||| || | ||| |||||||||||||||| || || | || ||| | ||| Sbjct 130760 TCTACCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCA 130819 Query 68368 GAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGT 68427 ||||| |||||||||| || || | || ||| || || | || ||||||||||| Sbjct 130820 GAGAAACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGA 130879 Query 68428 GCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCA 68487 || || ||||||||| ||||||||| ||||||| |||| | ||||||||| ||| Sbjct 130880 GCTGAATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCA 130939 Query 68488 CGTCCCATGTATGCAAAGATAC-CAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACC 68546 || |||| ||| ||| ||| ||| | ||| || | | | || | ||||||| Sbjct 130940 CGACCCA--TATAACAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACC 130997 Query 68547 ACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACC 68606 ||||||||| ||||| |||||||| | ||| ||||||||||| || ||||| || | || Sbjct 130998 ACCATTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCC 131057 Query 68607 AATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGA 68666 || || || | |||| || ||||||| || || ||||| ||||| || | || Sbjct 131058 GATCGCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGA 131117 Query 68667 ACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 |||| || ||| | ||||||||||| || || | || | || || |||||||||| Sbjct 131118 ACCAAAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 131176 >seq2365 Length=77851 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 68265 AGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAG 68324 ||| || || | ||| || || || ||||| ||||||||||||||| | | ||| || | Sbjct 13883 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 13824 Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 ||| |||||||||||||||| || || | |||||| | |||||||| |||||||| Sbjct 13823 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 13764 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 | ||| || | || ||| || || | || |||| |||||| || || | ||||||| Sbjct 13763 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 13704 Query 68445 GATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAA 68504 ||||||||| ||||||| |||| | ||||||||| ||||| ||||| || | Sbjct 13703 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 13644 Query 68505 GATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 | ||||| | |||||| | | | || | |||||||||||||||| ||||| || Sbjct 13643 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 13584 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 |||||| | ||| |||||| ||| || ||||| || |||| | | | || Sbjct 13583 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCG-------AGTTGG 13536 Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || || |||||||| || || ||||| ||||| || | |||||| || ||| || | Sbjct 13535 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCGTG 13476 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 ||||||||| || || | || ||| ||||||||||||| Sbjct 13475 AATACCATCAATATC--TATTGGAAGCTGCGATGAAGGCGA 13437 >seq160 Length=286096 Score = 147 bits (162), Expect = 2e-30 Identities = 135/170 (79%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 67948 CTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 ||||||| | ||| |||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 255297 CTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATA 255238 Query 68008 CCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAA 68067 || | |||||||||||||| || || |||||||| ||||| |||||||| | ||| Sbjct 255237 CCTAAAGCAGTGAACCAGATCCCTACTACAGGCCAGGCAGC---CAAGAAGTGTAAAGAA 255181 Query 68068 CGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCC 68117 || ||||||||||| ||||| |||||||| | ||||| || || || Sbjct 255180 CGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACC 255131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571957086395880