Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq7208 244 1e-59 seq691 237 2e-57 seq2365 217 2e-51 seq160 141 1e-28 >seq7208 Length=13341 Score = 244 bits (270), Expect = 1e-59 Identities = 417/598 (70%), Gaps = 5/598 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | |||||| ||||| || || |||||||| |||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAA-CA 157757 || || || || || || || | ||| || || |||||| | || ||| | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 | || ||||||||||| || | || | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | || ||||| |||| ||||||| ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | |||||| | ||||| | | || ||||| ||||| ||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 |||| |||| ||| || ||||| ||| | ||||| |||| || || || || | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 || | ||| | |||| ||| |||||||| ||| || ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 ||||||||||||| |||| ||| ||||||||| ||| | ||||||||||||| ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 158175 | || || || | ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCA 2271 >seq691 Length=167025 Score = 237 bits (262), Expect = 2e-57 Identities = 358/504 (71%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 157655 TTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 157714 ||| | ||||| || ||| || |||||||| | || || | || | || || || Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 157715 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 157774 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 157775 GTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 157834 || | ||| ||| || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 157835 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATT 157894 |||||||| ||| | || || |||||||||| | || | || | || ||| | || Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 157895 G-GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCC 157953 | ||| || || || ||||| ||||||||||||||| | | || | ||||||| || Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 157954 CTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTA 158013 ||||| ||| |||||||| ||||| || || || || ||||||| ||| | | || Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 130844 Query 158014 TCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAA 158073 || |||||||||| |||||| |||| |||| || | || |||||||||||||| || Sbjct 130843 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 130784 Query 158074 CTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGG 158133 || ||| |||||||| | | ||| ||||||||||||||||| || || || ||| | || Sbjct 130783 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 130724 Query 158134 TGTTGCTGGGGTATTCGGTGGATC 158157 ||| ||||| ||| |||| ||| Sbjct 130723 TGTAGCTGGTGTAGCTGGTGCATC 130700 >seq2365 Length=77851 Score = 217 bits (240), Expect = 2e-51 Identities = 325/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 157680 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 157739 |||||||| |||| ||| || | || || || || || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 157740 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTG 157799 | | | ||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTT-------TCCAACTCGATTG 13547 Query 157800 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 157859 || || || || || |||||| ||||| |||||||| ||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 157860 GTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTG 157919 |||||| | || | || | |||||| | ||||| | | || ||||| |||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 157920 AGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTC 157979 ||||||||||| | | || | ||||||| || ||||| ||| ||| |||| |||| Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 157980 CAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCG 158039 | || | || || ||||||| ||| | | || ||| | |||||||| |||||| | Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 158040 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158099 ||| ||||||| | || |||||||||||||| |||| ||| |||||||| | | ||| | Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 158100 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158140 |||||||||||||||| || || || ||| | ||||| ||| Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 141 bits (156), Expect = 1e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 158276 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 158334 ||||||| | | || || || ||||| || ||||||||||| ||| ||||||||||| Sbjct 255118 GTCGCAGTGAAACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 255177 Query 158335 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCT 158394 ||||| || |||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 255178 TCGTTCTTTACACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTT 255234 Query 158395 TGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGA 158454 || | || |||||||||||||| || |||||||| |||||||| || | |||| Sbjct 255235 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 255294 Query 158455 TGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 158488 | | || ||||| || | || || ||||| ||| Sbjct 255295 TAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548281114659880