Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq7208 268 1e-66 seq691 259 5e-64 seq2365 228 9e-55 seq160 138 1e-27 >seq7208 Length=13341 Score = 268 bits (296), Expect = 1e-66 Identities = 427/610 (70%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 150870 GTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTT 150929 |||| || || | ||||| ||||| ||||||| || || | ||| | |||||| | Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTG 1766 Query 150930 GCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCG 150989 || || | || |||||||| ||||| || || || || ||||| || | ||| || | Sbjct 1767 TATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTG 1826 Query 150990 TTGCTGGTTCTCTGATGTACGGTAA-CAACATCATCTCTGGTGCTGTTGTTCCTTCTTCT 151048 || ||||||| | || || | || ||| || ||||||||||| || |||||| |||| Sbjct 1827 TTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCT 1886 Query 151049 AACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTC 151108 || ||| | |||| || || || | || ||||| || | | | ||||||||| | Sbjct 1887 GCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTA 1946 Query 151109 TACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTAC 151168 ||||| |||||||||| | || |||| | |||||| | ||||| | | ||| Sbjct 1947 TACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTAT 2006 Query 151169 ATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCA 151228 ||||||||||| |||||||| || | ||||||| |||||| ||||| ||| | Sbjct 2007 ATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCC 2066 Query 151229 TACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGT 151288 || || |||| ||||| ||||| | || | ||| | |||| ||| |||||||| Sbjct 2067 TATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGA 2126 Query 151289 TCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTC 151348 ||| ||| ||| ||| | | || || ||||| || ||||||| ||| ||| ||| Sbjct 2127 AGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTC 2186 Query 151349 CAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTC 151408 || ||| |||||||||| || | ||| || || || || | ||||| |||||||| ||| Sbjct 2187 CAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTC 2246 Query 151409 GGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAG 151468 || || || || ||| || ||||| |||| |||| || ||| || | | ||| Sbjct 2247 GGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAG 2305 Query 151469 ACCACCGAAA 151478 ||||| |||| Sbjct 2306 ACCACTGAAA 2315 >seq691 Length=167025 Score = 259 bits (286), Expect = 5e-64 Identities = 341/466 (73%), Gaps = 5/466 (1%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || ||||| || || | || | || || ||||| || || | || || ||||||| Sbjct 131174 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 131115 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | | || || ||||| || |||||||||| || |||| ||| | || ||||| Sbjct 131114 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 131055 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 |||| || || || || |||||||| || ||||| ||||||||| | ||||| |||||| Sbjct 131054 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 130995 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG-GTATCTATGCTTACATGGGTCGTGA 151179 |||| | || |||| | || ||| | ||| ||| || || ||| ||||||||||| Sbjct 130994 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATATGGGTCGTGA 130937 Query 151180 GTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTC 151238 ||||||||| || | | ||||||||| ||| ||||| ||| |||||||| || |||| Sbjct 130936 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTC 130878 Query 151239 CAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 151298 | ||||| ||||| | ||| || ||| | | || || |||||||||| |||||||| Sbjct 130877 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTG 130818 Query 151299 ATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGC 151358 ||| ||| | | || || ||||| || ||||||| ||| |||| ||| | | ||||| Sbjct 130817 ATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 130758 Query 151359 ACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||||| || ||||| || || || ||| | ||||| |||||||| Sbjct 130757 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 228 bits (252), Expect = 9e-55 Identities = 330/463 (71%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || |||||||| ||| || | || || ||||| || | || || || ||||||| Sbjct 13439 GCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTTCT 13496 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | | || || ||||| || ||||||||||| || |||| ||| | || Sbjct 13497 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGAT---- 13545 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 |||| || || || || |||||| || ||||| ||||||||| | ||||| |||||| Sbjct 13546 -TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 13604 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAG 151180 |||| | || |||| | |||||| | ||||| | | ||| |||||||||||| Sbjct 13605 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 13664 Query 151181 TGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCC 151239 |||||||| || | | ||||||||| ||| ||||| ||| |||||| | || ||||| Sbjct 13665 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCTCC 13723 Query 151240 AGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 151299 ||| | ||||| | ||| || ||| | | || ||| | |||||||| ||||||||| Sbjct 13724 TGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGA 13783 Query 151300 TGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 151359 || ||||| | || || ||||| || ||||||| ||| |||| ||| | | |||||| Sbjct 13784 TGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 13843 Query 151360 CAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 |||||| || ||||| || || || ||| | ||||| ||| || Sbjct 13844 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 138 bits (152), Expect = 1e-27 Identities = 127/160 (79%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 151545 ACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGC 151604 ||||||| |||||||| | ||||||||||| ||| |||||||| || ||||| | | Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 151605 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCA 151664 ||||||| || || |||||||| || || |||||||||||||| | ||| | || | Sbjct 255189 ACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 151665 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 | |||||||||||||| || |||||||| |||||||| || Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 255285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549528902359480