Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq691 197 2e-45 seq2365 183 3e-41 seq7208 172 6e-38 seq160 125 8e-24 >seq691 Length=167025 Score = 197 bits (218), Expect = 2e-45 Identities = 327/471 (69%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387 || ||| | || ||||| || || | |||| | ||||| || || || | | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 72388 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 72447 |||||||| | ||||| ||||| || |||||||||| | ||||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507 || || ||||| || || || || || |||||||| || || | || || ||||| || Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 || || |||||||| || || || || | || ||| ||| | | | || || ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || || ||| |||||||| ||| ||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| | || || ||| || ||| | | || | ||||||| || Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 ||||||||||||||| | |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 72798 | ||| |||||||| || ||||| || || || ||| ||||||||| ||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq2365 Length=77851 Score = 183 bits (202), Expect = 3e-41 Identities = 320/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387 || ||| | || |||||||| ||| |||| | ||||| || || || || || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 72388 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 72447 |||||||| | ||||| ||||| || ||||||||||| | ||||| || Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTC----- 13542 Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507 |||| || || || || || |||||| || || | || || ||||| || Sbjct 13543 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 || || |||||||| || || || || | |||||| | |||| | || || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || || ||| |||||||| ||| ||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| || || || ||| || ||| | | || || | ||||| || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 ||||||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 72794 | ||| |||||||| || ||||| || || || ||| ||||||||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 172 bits (190), Expect = 6e-38 Identities = 385/570 (68%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 72338 ||||||||||| || |||||||| | ||| | ||||| | || || ||| | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACCTCTGTATTTATTATCGC 1779 Query 72339 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 72398 |||||||| ||||||||||| ||||| || || || || || ||| |||||||| Sbjct 1780 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTT 1839 Query 72399 CTTATATGGTAA-CAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGAT 72457 | ||| | || ||| || ||||||||||| | |||| | ||| || || ||| Sbjct 1840 AATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGAT 1899 Query 72458 TACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTC 72517 | || || || || | || ||||| || | | || || ||||| || || || |||| Sbjct 1900 TGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 72518 CTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGT 72577 ||| || || || || | |||||| | |||| | || || |||||| | | | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 72578 GGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTG 72637 ||||||| | | | || | | | |||||||| ||| | || ||| | |||| Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 72638 TATCTGCAGCATTTGCAG---TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 72694 | |||||| | ||| | ||| | | || || ||||| || || ||| Sbjct 2080 T---TGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTA 2136 Query 72695 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAAC 72754 |||||||| | |||| ||||| ||||| |||||||| ||| || ||||| ||| | | Sbjct 2137 ATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGC 2196 Query 72755 ACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTC 72814 ||||||| || | ||| || || || || ||||||||| ||| | ||||| ||| | Sbjct 2197 ACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGT-TCC 2255 Query 72815 TCTTCAGTGCAATGCACGGTTCACTTGTTA 72844 | |||| ||| ||||| |||| |||| || Sbjct 2256 TATTCAATGCTATGCATAGTTC-CTTGGTA 2284 >seq160 Length=286096 Score = 125 bits (138), Expect = 8e-24 Identities = 129/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 72943 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 73002 || || || ||| ||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 73003 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACA 73062 |||| | |||| | |||||||| | | ||||| || | | ||||| |||| Sbjct 255191 TTCT---TGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 73063 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 |||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572776147039720